RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 ZNF559Q9BR84 538 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 LAT2Q9GZY6 243 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 AMBNQ9NP70 447 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 POLE3Q9NRF9 147 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 B4GALT7Q9UBV7 327 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 TESQ9UGI8 421 aaKnown RBP8.33□□□□□ -1.08
USP4-202ENST00000351842 MED31Q9Y3C7 131 aa8.33□□□□□ -1.08
USP4-202ENST00000351842 HELZ2Q9BYK8 2649 aaKnown RBP8.32□□□□□ -1.08
USP4-202ENST00000351842 TPOP07202 933 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 FCGR1AP12314 374 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 NAGAP17050 411 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 IGFBP5P24593 272 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 DNAJA1P31689 397 aaKnown RBP8.32□□□□□ -1.08
USP4-202ENST00000351842 OR2B6P58173 313 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 PRAMEF8Q5VWM4 474 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 PRAMEF7Q5VXH5 474 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 CARD17Q5XLA6 110 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 ZER1Q7Z7L7 766 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 GCNT2Q8N0V5 402 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 SLC15A4Q8N697 577 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 ROBO4Q8WZ75 1007 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 UBE2FQ969M7 185 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 BPIFA2Q96DR5 249 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 ANGPTL4Q9BY76 406 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 PRRG4Q9BZD6 226 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 OCEL1Q9H607 264 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 MEPEQ9NQ76 525 aaPredicted RBP8.32□□□□□ -1.08
USP4-202ENST00000351842 ARMC1Q9NVT9 282 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 GPR52Q9Y2T5 361 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 A0A0B4J2E0 115 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 A0A1B0GX12 115 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 TMEM72A0PK05 275 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 H7C1C5 153 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 ACOT7O00154 380 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 SYT5O00445 386 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 EFNA2O43921 213 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 CBR3O75828 277 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 ADORA3P0DMS8 318 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 MAKP20794 623 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 LCN6P62502 163 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 PLPPR5Q32ZL2 321 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 SPATS1Q496A3 300 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 CCDC92Q53HC0 331 aaPredicted RBP8.32□□□□□ -1.08
USP4-202ENST00000351842 SLC30A6Q6NXT4 461 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 ZNF585AQ6P3V2 769 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 B3GLCTQ6Y288 498 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 OAFQ86UD1 273 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 IQCF2Q8IXL9 164 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 GOLM1Q8NBJ4 401 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 PIGXQ8TBF5 258 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 TMEM234Q8WY98 164 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 CNBD2Q96M20 576 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 UCN2Q96RP3 112 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 IL4I1Q96RQ9 567 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 ZNF347Q96SE7 839 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 POLR2J3Q9H1A7 115 aaKnown RBP8.32□□□□□ -1.08
USP4-202ENST00000351842 ADNPQ9H2P0 1102 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 NANSQ9NR45 359 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 CHRNA9Q9UGM1 479 aa8.32□□□□□ -1.08
USP4-202ENST00000351842 A0A1B0GTH9 108 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 SNPHO15079 494 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 CXCL13O43927 109 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 NME2P1O60361 137 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 SNX4O95219 450 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 APOL3O95236 402 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 NME2P22392 152 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 ENPP1P22413 925 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 CENPAP49450 140 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 GAS1P54826 345 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 UCNP55089 124 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 FOXO1Q12778 655 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 SLC10A1Q14973 349 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 IQCCQ4KMZ1 466 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 NCCRP1Q6ZVX7 275 aaPredicted RBP8.31□□□□□ -1.08
USP4-202ENST00000351842 CHMP1BQ7LBR1 199 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 ADGRG3Q86Y34 549 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 CDK20Q8IZL9 346 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 CLDN22Q8N7P3 220 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 EXD3Q8N9H8 876 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 CYB561A3Q8NBI2 242 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 FAM98AQ8NCA5 519 aaKnown RBP8.31□□□□□ -1.08
USP4-202ENST00000351842 OR51L1Q8NGJ5 315 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 TAAR8Q969N4 342 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 EMC6Q9BV81 110 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 ENKD1Q9H0I2 346 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 MAGIXQ9H6Y5 334 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 ASF1BQ9NVP2 202 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 ADAM18Q9Y3Q7 739 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 ORC6Q9Y5N6 252 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 GMEB1Q9Y692 573 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 PTPN13Q12923 2485 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 FAM171A2A8MVW0 826 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 SULT2B1O00204 365 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 ATXN7O15265 892 aaPredicted RBP8.31□□□□□ -1.08
USP4-202ENST00000351842 ZIC3O60481 467 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 OR6A2O95222 327 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 AHSA1O95433 338 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 GNAO1P09471 354 aa8.31□□□□□ -1.08
USP4-202ENST00000351842 ZNF26P17031 533 aaPredicted RBP8.31□□□□□ -1.08
USP4-202ENST00000351842 GSTT1P30711 240 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms