RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 COL9A2Q14055 689 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 TIGD3Q6B0B8 471 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 AAED1Q7RTV5 226 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 PRR22Q8IZ63 422 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 ZNF101Q8IZC7 436 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 CNIH3Q8TBE1 160 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 OR5B2Q96R09 309 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 VN1R1Q9GZP7 353 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 ZNF768Q9H5H4 540 aaKnown RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 MOV10Q9HCE1 1003 aaKnown RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 SLC7A11Q9UPY5 501 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 DOPEY1Q5JWR5 2465 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 MN1Q10571 1320 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 LOC102725191A0A1B0GVB3 256 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 FAM227AF5H4B4 570 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 ORC5O43913 435 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 SLC16A7O60669 478 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 MRPL33O75394 65 aaKnown RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 POLR2IP36954 125 aaKnown RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 NAA10P41227 235 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 EIF1AXP47813 144 aaKnown RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 YBX1P67809 324 aaKnown RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 ZNF628Q5EBL2 1059 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 BAIAP2L2Q6UXY1 529 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 LRRC17Q8N6Y2 441 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 MINDY2Q8NBR6 621 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 OR5J2Q8NH18 312 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 STK35Q8TDR2 534 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 CCDC74BQ96LY2 380 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 DSN1Q9H410 356 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 GPATCH2Q9NW75 528 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 KLHL9Q9P2J3 617 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 DOCK6Q96HP0 2047 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 PTPRFP10586 1907 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 COL11A1P12107 1806 aaPredicted RBP6.32□□□□□ -1.4
SF3B1-201ENST00000335508 CDC14CA4D256 554 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 STK17BO94768 372 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 RPP14O95059 124 aaKnown RBP6.32□□□□□ -1.4
SF3B1-201ENST00000335508 TPTEP56180 551 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 CLRN1P58418 232 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 SNRPGP62308 76 aaKnown RBP6.32□□□□□ -1.4
SF3B1-201ENST00000335508 HOXC5Q00444 222 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 TIAL1Q01085 375 aaKnown RBP eCLIP6.32□□□□□ -1.41e-7■■■■■ 62.8
SF3B1-201ENST00000335508 DMWDQ09019 674 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 FUT7Q11130 342 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 MALLQ13021 153 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 EBPQ15125 230 aaKnown RBP6.32□□□□□ -1.4
SF3B1-201ENST00000335508 TRIP6Q15654 476 aaKnown RBP6.32□□□□□ -1.4
SF3B1-201ENST00000335508 EMC4Q5J8M3 183 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 SLC35D2Q76EJ3 337 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 ZADH2Q8N4Q0 377 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 CHST4Q8NCG5 386 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 ADAMTS14Q8WXS8 1223 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 PITX2Q99697 317 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 RBM24Q9BX46 236 aaKnown RBP6.32□□□□□ -1.4
SF3B1-201ENST00000335508 COMMD3Q9UBI1 195 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 KCNG2Q9UJ96 466 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 DOCK8Q8NF50 2099 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 B4GAT1O43505 415 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 GKN3PP0CG01 181 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 ACP2P11117 423 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 PCBP4P57723 403 aaKnown RBP6.32□□□□□ -1.4
SF3B1-201ENST00000335508 SYT14P1Q58G82 188 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 SLC35D3Q5M8T2 416 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 PGBD2Q6P3X8 592 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 FIP1L1Q6UN15 594 aaKnown RBP6.32□□□□□ -1.4
SF3B1-201ENST00000335508 ZNF620Q6ZNG0 422 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 ARIH2OSQ8N7S6 290 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 TEX19Q8NA77 164 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 OR52N1Q8NH53 320 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 PGAM5Q96HS1 289 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 TBX5Q99593 518 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 NRSN2Q9GZP1 204 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 UCKL1Q9NWZ5 548 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 PLEK2Q9NYT0 353 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 NDRG4Q9ULP0 352 aaKnown RBP6.32□□□□□ -1.4
SF3B1-201ENST00000335508 EMC9Q9Y3B6 208 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 SETD2Q9BYW2 2564 aaPredicted RBP6.32□□□□□ -1.4
SF3B1-201ENST00000335508 FIGNL2A6NMB9 653 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 H3BSA7 217 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 UCNP55089 124 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 RNF4P78317 190 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 MXD1Q05195 221 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 CRMP1Q14194 572 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.32□□□□□ -1.4
SF3B1-201ENST00000335508 COX20Q5RI15 118 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 RPL22L1Q6P5R6 122 aaKnown RBP6.32□□□□□ -1.4
SF3B1-201ENST00000335508 LEG1Q6P5S2 330 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 CCDC54Q8NEL0 328 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 OR4C3Q8NH37 302 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 OR1L3Q8NH93 324 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 ZFAND2BQ8WV99 257 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 SPTSSAQ969W0 71 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 S100A16Q96FQ6 103 aaKnown RBP6.32□□□□□ -1.4
SF3B1-201ENST00000335508 ZFP3Q96NJ6 502 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 ITGB1BP2Q9UKP3 347 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 SPEF1Q9Y4P9 236 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 NPIPA5A0A0B4J1W7 369 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 TMEM129A0AVI4 362 aa6.32□□□□□ -1.4
SF3B1-201ENST00000335508 CCDC182A6NF36 153 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms