RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 FAM107AO95990 144 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 IMPDH2P12268 514 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 PRF1P14222 555 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 POU2F1P14859 743 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 FPR1P21462 350 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 KDELR2P33947 212 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 H3F3AP84243 136 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 LIPEQ05469 1076 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 FAM27E3Q08E93 113 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 BNIP2Q12982 314 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 CEACAM7Q14002 265 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 OR1Q1Q15612 314 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 NRF1Q16656 503 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 ALG10BQ5I7T1 473 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 C1orf140Q5VVS0 124 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 C5orf46Q6UWT4 87 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 COMTD1Q86VU5 262 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 MICU2Q8IYU8 434 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 GPR32P1Q8NGA4 272 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 PIGXQ8TBF5 258 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 RNF217Q8TC41 542 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 PROX1Q92786 737 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 TAMM41Q96BW9 452 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 DNAJA3Q96EY1 480 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 MCHR1Q99705 422 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 ARHGDIGQ99819 225 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 PSD2Q9BQI7 771 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 PRR14Q9BWN1 585 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 C12orf49Q9H741 205 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 EMC3Q9P0I2 261 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 ADAM21Q9UKJ8 722 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 SLC9A8Q9Y2E8 581 aa12.48□□□□□ -0.41
LIMS1-201ENST00000332345 LIPT2A6NK58 231 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 C16orf97H3BN30 126 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 GSTA4O15217 222 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 OR2T1O43869 369 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 EPXP11678 715 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 CD247P20963 164 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 HTR2AP28223 471 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 SLC7A2P52569 658 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 PSME3P61289 254 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 TLE4Q04727 773 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 SNTB1Q13884 538 aaKnown RBP12.47□□□□□ -0.41
LIMS1-201ENST00000332345 OR7A5Q15622 319 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 EXOC3L2Q2M3D2 409 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 C8orf82Q6P1X6 216 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-201ENST00000332345 ZNF613Q6PF04 617 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 PAQR6Q6TCH4 344 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 C6orf89Q6UWU4 347 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 NUFIP2Q7Z417 695 aaKnown RBP12.47□□□□□ -0.41
LIMS1-201ENST00000332345 GALNT5Q7Z7M9 940 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 OR6T1Q8NGN1 323 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 SLC38A4Q969I6 547 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 DACH2Q96NX9 599 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 CRIM1Q9NZV1 1036 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 USP22Q9UPT9 525 aa12.47□□□□□ -0.41
LIMS1-201ENST00000332345 ITPR2Q14571 2701 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 FREM1Q5H8C1 2179 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 IGKV3D-15A0A087WSY6 115 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 A0A087WUJ7 227 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 CYSRT1A8MQ03 144 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 TMEM229AB2RXF0 380 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 M0R3H8 397 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 CASKO14936 926 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 TPST2O60704 377 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 NPIPB7O75200 414 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 AHSA1O95433 338 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 MNAT1P51948 309 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 SWT1Q5T5J6 900 aaKnown RBP12.46□□□□□ -0.41
LIMS1-201ENST00000332345 TMEM225Q6GV28 225 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 ABLIM2Q6H8Q1 611 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 CCDC103Q8IW40 242 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 MFSD8Q8NHS3 518 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 LINC01560Q8TB33 94 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 LZICQ8WZA0 190 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 ZNF775Q96BV0 537 aaPredicted RBP12.46□□□□□ -0.41
LIMS1-201ENST00000332345 WFDC6Q9BQY6 131 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 HDHD5Q9BXW7 423 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 KLHL4Q9C0H6 718 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 ALG2Q9H553 416 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 MCCC2Q9HCC0 563 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 TAGLN3Q9UI15 199 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 ING1Q9UK53 422 aaPredicted RBP12.46□□□□□ -0.41
LIMS1-201ENST00000332345 SH3GLB1Q9Y371 365 aa12.46□□□□□ -0.41
LIMS1-201ENST00000332345 NOTCH2Q04721 2471 aa12.46□□□□□ -0.42
LIMS1-201ENST00000332345 ANKHD1Q8IWZ3 2542 aaKnown RBP12.45□□□□□ -0.42
LIMS1-201ENST00000332345 A0A0B4J2E0 115 aa12.45□□□□□ -0.42
LIMS1-201ENST00000332345 A0A1B0GX12 115 aa12.45□□□□□ -0.42
LIMS1-201ENST00000332345 SH3D21A4FU49 640 aa12.45□□□□□ -0.42
LIMS1-201ENST00000332345 NME4O00746 187 aa12.45□□□□□ -0.42
LIMS1-201ENST00000332345 SHOX2O60902 331 aaPredicted RBP12.45□□□□□ -0.42
LIMS1-201ENST00000332345 AKR7A3O95154 331 aa12.45□□□□□ -0.42
LIMS1-201ENST00000332345 VAMP5O95183 116 aa12.45□□□□□ -0.42
LIMS1-201ENST00000332345 KLK2P20151 261 aa12.45□□□□□ -0.42
LIMS1-201ENST00000332345 GTF2E2P29084 291 aaKnown RBP12.45□□□□□ -0.42
LIMS1-201ENST00000332345 UGT2B10P36537 528 aa12.45□□□□□ -0.42
LIMS1-201ENST00000332345 CRYBA2P53672 197 aa12.45□□□□□ -0.42
LIMS1-201ENST00000332345 SLC16A1P53985 500 aa12.45□□□□□ -0.42
LIMS1-201ENST00000332345 CDH12P55289 794 aa12.45□□□□□ -0.42
LIMS1-201ENST00000332345 SELENOWP63302 87 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms