RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 HS3ST5Q8IZT8 346 aa16.35■□□□□ 0.21
HMGA1-201ENST00000311487 SLC7A13Q8TCU3 470 aa16.35■□□□□ 0.21
HMGA1-201ENST00000311487 SLC25A36Q96CQ1 311 aa16.35■□□□□ 0.21
HMGA1-201ENST00000311487 ZNF845Q96IR2 970 aaPredicted RBP16.35■□□□□ 0.21
HMGA1-201ENST00000311487 HHATLQ9HCP6 504 aa16.35■□□□□ 0.21
HMGA1-201ENST00000311487 PNPLA3Q9NST1 481 aa16.35■□□□□ 0.21
HMGA1-201ENST00000311487 C20orf141Q9NUB4 165 aa16.35■□□□□ 0.21
HMGA1-201ENST00000311487 SMPD3Q9NY59 655 aaPredicted RBP16.35■□□□□ 0.21
HMGA1-201ENST00000311487 SHANK1Q9Y566 2161 aa16.35■□□□□ 0.21
HMGA1-201ENST00000311487 FAM208BQ5VWN6 2430 aa16.34■□□□□ 0.21
HMGA1-201ENST00000311487 A0A087WUJ7 227 aa16.34■□□□□ 0.21
HMGA1-201ENST00000311487 A0A0J9YW62 118 aa16.34■□□□□ 0.21
HMGA1-201ENST00000311487 ETV2O00321 342 aaPredicted RBP16.34■□□□□ 0.21
HMGA1-201ENST00000311487 HOXB6P17509 224 aaKnown RBP16.34■□□□□ 0.21
HMGA1-201ENST00000311487 FUT1P19526 365 aa16.34■□□□□ 0.21
HMGA1-201ENST00000311487 HTR3AP46098 478 aa16.34■□□□□ 0.21
HMGA1-201ENST00000311487 UGT2B15P54855 530 aa16.34■□□□□ 0.21
HMGA1-201ENST00000311487 CLDN18P56856 261 aa16.34■□□□□ 0.21
HMGA1-201ENST00000311487 ST3GAL3Q11203 375 aa16.34■□□□□ 0.21
HMGA1-201ENST00000311487 MRPL49Q13405 166 aaKnown RBP16.34■□□□□ 0.21
HMGA1-201ENST00000311487 EXOC3L2Q2M3D2 409 aa16.34■□□□□ 0.21
HMGA1-201ENST00000311487 SYT14P1Q58G82 188 aa16.34■□□□□ 0.21
HMGA1-201ENST00000311487 OR2T5Q6IEZ7 315 aa16.34■□□□□ 0.21
HMGA1-201ENST00000311487 C3orf33Q6P1S2 294 aa16.34■□□□□ 0.21
HMGA1-201ENST00000311487 ZNF585AQ6P3V2 769 aa16.34■□□□□ 0.21
HMGA1-201ENST00000311487 ARHGAP11AQ6P4F7 1023 aa16.34■□□□□ 0.21
HMGA1-201ENST00000311487 PODNL1Q6PEZ8 512 aa16.34■□□□□ 0.21
HMGA1-201ENST00000311487 PIWIL3Q7Z3Z3 882 aaKnown RBP16.34■□□□□ 0.21
HMGA1-201ENST00000311487 ZNF605Q86T29 641 aa16.34■□□□□ 0.21
HMGA1-201ENST00000311487 GGNQ86UU5 652 aa16.34■□□□□ 0.21
HMGA1-201ENST00000311487 GHDCQ8N2G8 530 aa16.34■□□□□ 0.21
HMGA1-201ENST00000311487 OR2T29Q8NH02 315 aa16.34■□□□□ 0.21
HMGA1-201ENST00000311487 SERINC1Q9NRX5 453 aa16.34■□□□□ 0.21
HMGA1-201ENST00000311487 IGHV3-15A0A0B4J1V0 119 aa16.33■□□□□ 0.21
HMGA1-201ENST00000311487 TPOP07202 933 aa16.33■□□□□ 0.21
HMGA1-201ENST00000311487 GNAO1P09471 354 aa16.33■□□□□ 0.21
HMGA1-201ENST00000311487 ZNF17P17021 662 aa16.33■□□□□ 0.21
HMGA1-201ENST00000311487 MYF6P23409 242 aa16.33■□□□□ 0.21
HMGA1-201ENST00000311487 ADH6P28332 368 aa16.33■□□□□ 0.21
HMGA1-201ENST00000311487 EIF1AXP47813 144 aaKnown RBP16.33■□□□□ 0.21
HMGA1-201ENST00000311487 RAC1P63000 192 aa16.33■□□□□ 0.21
HMGA1-201ENST00000311487 TLE1Q04724 770 aa16.33■□□□□ 0.21
HMGA1-201ENST00000311487 GLYR1Q49A26 553 aaPredicted RBP16.33■□□□□ 0.21
HMGA1-201ENST00000311487 OTUD3Q5T2D3 398 aaPredicted RBP16.33■□□□□ 0.21
HMGA1-201ENST00000311487 C10orf53Q8N6V4 93 aa16.33■□□□□ 0.21
HMGA1-201ENST00000311487 MEPEQ9NQ76 525 aaPredicted RBP16.33■□□□□ 0.21
HMGA1-201ENST00000311487 PLSCR2Q9NRY7 297 aa16.33■□□□□ 0.21
HMGA1-201ENST00000311487 SEC14L4Q9UDX3 406 aa16.33■□□□□ 0.21
HMGA1-201ENST00000311487 TNFRSF11BO00300 401 aa16.33■□□□□ 0.2
HMGA1-201ENST00000311487 HCN1O60741 890 aa16.33■□□□□ 0.2
HMGA1-201ENST00000311487 CHMP24386 653 aa16.33■□□□□ 0.2
HMGA1-201ENST00000311487 PTGS2P35354 604 aa16.33■□□□□ 0.2
HMGA1-201ENST00000311487 ALDH3A2P51648 485 aa16.33■□□□□ 0.2
HMGA1-201ENST00000311487 MYBPHQ13203 477 aa16.33■□□□□ 0.2
HMGA1-201ENST00000311487 SELENBP1Q13228 472 aa16.33■□□□□ 0.2
HMGA1-201ENST00000311487 DAG1Q14118 895 aa16.33■□□□□ 0.2
HMGA1-201ENST00000311487 TRAM2Q15035 370 aa16.33■□□□□ 0.2
HMGA1-201ENST00000311487 KRT80Q6KB66 452 aa16.33■□□□□ 0.2
HMGA1-201ENST00000311487 LINC00114Q6XXX2 140 aa16.33■□□□□ 0.2
HMGA1-201ENST00000311487 ZNF730Q6ZMV8 503 aa16.33■□□□□ 0.2
HMGA1-201ENST00000311487 OFCC1Q8IZS5 231 aa16.33■□□□□ 0.2
HMGA1-201ENST00000311487 LRRC17Q8N6Y2 441 aa16.33■□□□□ 0.2
HMGA1-201ENST00000311487 TMEM239Q8WW34 195 aa16.33■□□□□ 0.2
HMGA1-201ENST00000311487 TAAR8Q969N4 342 aa16.33■□□□□ 0.2
HMGA1-201ENST00000311487 WDYHV1Q96HA8 205 aa16.33■□□□□ 0.2
HMGA1-201ENST00000311487 SAMHD1Q9Y3Z3 626 aaKnown RBP16.33■□□□□ 0.2
HMGA1-201ENST00000311487 A0A087WUU8 490 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 SNAP29O95721 258 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 PNMTP11086 282 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 ABOP16442 354 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 ZNF708P17019 499 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 PRKACGP22612 351 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 APOFQ13790 326 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 CTU2Q2VPK5 515 aaKnown RBP16.32■□□□□ 0.2
HMGA1-201ENST00000311487 GXYLT1Q4G148 440 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 KRTCAP3Q53RY4 240 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 ANKRD34AQ69YU3 496 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 TTC33Q6PID6 262 aaPredicted RBP16.32■□□□□ 0.2
HMGA1-201ENST00000311487 STK32CQ86UX6 486 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 NRMQ8IXM6 262 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 DHRSXQ8N5I4 330 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 PIK3C3Q8NEB9 887 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 CYGBQ8WWM9 190 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 ALPK1Q96QP1 1244 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 ZNF347Q96SE7 839 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 MRPS26Q9BYN8 205 aaKnown RBP16.32■□□□□ 0.2
HMGA1-201ENST00000311487 EVA1AQ9H8M9 152 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 TINAGQ9UJW2 476 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 LYVE1Q9Y5Y7 322 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 ZNF462Q96JM2 2506 aa16.32■□□□□ 0.2
HMGA1-201ENST00000311487 A0A1B0GVC2 190 aa16.31■□□□□ 0.2
HMGA1-201ENST00000311487 G3V2T6 193 aa16.31■□□□□ 0.2
HMGA1-201ENST00000311487 AQP7O14520 342 aa16.31■□□□□ 0.2
HMGA1-201ENST00000311487 CXCL13O43927 109 aa16.31■□□□□ 0.2
HMGA1-201ENST00000311487 ALPLP05186 524 aa16.31■□□□□ 0.2
HMGA1-201ENST00000311487 IMPDH2P12268 514 aa16.31■□□□□ 0.2
HMGA1-201ENST00000311487 POU2F1P14859 743 aa16.31■□□□□ 0.2
HMGA1-201ENST00000311487 IFNA8P32881 189 aa16.31■□□□□ 0.2
HMGA1-201ENST00000311487 CAPGP40121 348 aa16.31■□□□□ 0.2
HMGA1-201ENST00000311487 OR7A5Q15622 319 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms