RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 ANKRD19PQ9H560 264 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 FKRPQ9H9S5 495 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 CD93Q9NPY3 652 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 LAMA1P25391 3075 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 A0A1B0GVT2 93 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 ACOD1A6NK06 481 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 FGF17O60258 216 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 GMDSO60547 372 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 TFP02787 698 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 CTHP32929 405 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 TNFRSF17Q02223 184 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 TMEM44Q2T9K0 475 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 ARHGAP11BQ3KRB8 267 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 TMEM255AQ5JRV8 349 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 PRAMEF8Q5VWM4 474 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 PRAMEF7Q5VXH5 474 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 ZNF761Q86XN6 746 aaPredicted RBP9.26□□□□□ -0.93
LIG3-201ENST00000262327 LNX2Q8N448 690 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 FRMD1Q8N878 549 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 SRFBP1Q8NEF9 429 aaKnown RBP9.26□□□□□ -0.93
LIG3-201ENST00000262327 OR51Q1Q8NH59 317 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 LGALS14Q8TCE9 139 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 SCMH1Q96GD3 660 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 AHCYL2Q96HN2 611 aaKnown RBP9.26□□□□□ -0.93
LIG3-201ENST00000262327 PIGUQ9H490 435 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 CMC2Q9NRP2 79 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 OR6C2Q9NZP2 312 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 KCMF1Q9P0J7 381 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 GNG8Q9UK08 70 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 MED31Q9Y3C7 131 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 K7EQS6 105 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 PLPP2O43688 288 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 SLC22A5O76082 557 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 CFDP00746 253 aaPredicted RBP9.25□□□□□ -0.93
LIG3-201ENST00000262327 HOXB1P14653 301 aaPredicted RBP9.25□□□□□ -0.93
LIG3-201ENST00000262327 HK1P19367 917 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 KIR2DL1P43626 348 aaPredicted RBP9.25□□□□□ -0.93
LIG3-201ENST00000262327 EMDP50402 254 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 SHC2P98077 582 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 RGS1Q08116 209 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 OTPQ5XKR4 325 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 ZNF425Q6IV72 752 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 PYHIN1Q6K0P9 492 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 TEX261Q6UWH6 196 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 LINGO2Q7L985 606 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 CDK20Q8IZL9 346 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 ZNF619Q8N2I2 560 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 ZBTB44Q8NCP5 570 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 RAB7BQ96AH8 199 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 WDR89Q96FK6 387 aaPredicted RBP9.25□□□□□ -0.93
LIG3-201ENST00000262327 UBL7Q96S82 380 aaPredicted RBP9.25□□□□□ -0.93
LIG3-201ENST00000262327 OR10A4Q9H209 315 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 SRMSQ9H3Y6 488 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 FBRSQ9HAH7 460 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 FLRT3Q9NZU0 649 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 PPIEQ9UNP9 301 aaKnown RBP9.25□□□□□ -0.93
LIG3-201ENST00000262327 U3KQ87 197 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 SLC22A31A6NKX4 558 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 STX11O75558 287 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 CDC123O75794 336 aaPredicted RBP9.25□□□□□ -0.93
LIG3-201ENST00000262327 IFNA16P05015 189 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 H2AFB2P0C5Z0 115 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 SLC35G6P0C7Q6 338 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 ANXA3P12429 323 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 HIST1H1CP16403 213 aaKnown RBP9.25□□□□□ -0.93
LIG3-201ENST00000262327 DRD1P21728 446 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 PTBP1P26599 531 aaKnown RBP eCLIP9.25□□□□□ -0.93
LIG3-201ENST00000262327 SELENOPP49908 381 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 GDI2P50395 445 aaKnown RBP9.25□□□□□ -0.93
LIG3-201ENST00000262327 BTG1P62324 171 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 DUSP8Q13202 625 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 SNTB2Q13425 540 aaKnown RBP9.25□□□□□ -0.93
LIG3-201ENST00000262327 HYAL4Q2M3T9 481 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 LGALSLQ3ZCW2 172 aaPredicted RBP9.25□□□□□ -0.93
LIG3-201ENST00000262327 AMZ1Q400G9 498 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 STPG1Q5TH74 334 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 ENPP7Q6UWV6 458 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 DGAT2L6Q6ZPD8 337 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 OR2L13Q8N349 312 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 OR6K6Q8NGW6 343 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 ZPLD1Q8TCW7 415 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 SLC17A9Q9BYT1 436 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 KRCC1Q9NPI7 259 aaPredicted RBP9.25□□□□□ -0.93
LIG3-201ENST00000262327 TRABD2BA6NFA1 517 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 TEX46H3BTG2 121 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 SELENOFO60613 162 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 RCBTB2O95199 551 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 LYPD3O95274 346 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 CTSBP07858 339 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 NID1P14543 1247 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 DNASE1P24855 282 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 PPP2CBP62714 309 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 PPP2CAP67775 309 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 SMAD2Q15796 467 aaKnown RBP9.25□□□□□ -0.93
LIG3-201ENST00000262327 PRRT3Q5FWE3 981 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 TMEM196Q5HYL7 178 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 LUZP2Q86TE4 346 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 PAQR7Q86WK9 346 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 HLA-CQ95604 372 aa9.25□□□□□ -0.93
LIG3-201ENST00000262327 PELI1Q96FA3 418 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms