RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 AMDHD2Q9Y303 409 aa16.98■□□□□ 0.31
CLN3-262ENST00000637699 PDLIM1O00151 329 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 ANKRD28O15084 1053 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 APEHP13798 732 aaKnown RBP16.97■□□□□ 0.31
CLN3-262ENST00000637699 ALDH3A1P30838 453 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 VSNL1P62760 191 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 SWI5Q1ZZU3 235 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 MST1LQ2TV78 715 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 GRINAQ7Z429 371 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 HMGN2P46Q86SG4 172 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 ADGRG3Q86Y34 549 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 HOMEZQ8IX15 550 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 RIMKLAQ8IXN7 391 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 CLECL1Q8IZS7 167 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 SLC35G5Q96KT7 338 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 FOXN4Q96NZ1 517 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 SORCS2Q96PQ0 1159 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 ZNF350Q9GZX5 532 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 OR51I1Q9H343 314 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 PPCSQ9HAB8 311 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 EXD2Q9NVH0 621 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 DCTN4Q9UJW0 460 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 FKBP7Q9Y680 259 aa16.97■□□□□ 0.31
CLN3-262ENST00000637699 RNF103-CHMP3A0A140T963 221 aa16.96■□□□□ 0.31
CLN3-262ENST00000637699 DNPH1O43598 174 aa16.96■□□□□ 0.31
CLN3-262ENST00000637699 NPHS1O60500 1241 aa16.96■□□□□ 0.31
CLN3-262ENST00000637699 HNF1AP20823 631 aa16.96■□□□□ 0.31
CLN3-262ENST00000637699 TSPO2Q5TGU0 170 aa16.96■□□□□ 0.31
CLN3-262ENST00000637699 C17orf78Q8N4C9 275 aa16.96■□□□□ 0.31
CLN3-262ENST00000637699 FAM71CQ8NEG0 241 aa16.96■□□□□ 0.31
CLN3-262ENST00000637699 C1orf162Q8NEQ5 155 aaPredicted RBP16.96■□□□□ 0.31
CLN3-262ENST00000637699 MECRQ9BV79 373 aa16.96■□□□□ 0.31
CLN3-262ENST00000637699 PARPBPQ9NWS1 579 aa16.96■□□□□ 0.31
CLN3-262ENST00000637699 TMEM181Q9P2C4 612 aa16.96■□□□□ 0.31
CLN3-262ENST00000637699 SLC35A3Q9Y2D2 325 aa16.96■□□□□ 0.31
CLN3-262ENST00000637699 IGHV4-61A0A0C4DH41 118 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 TLDC2A0PJX2 215 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 NDUFS8O00217 210 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 KLF11O14901 512 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 KIAA0513O60268 411 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 SKAP2O75563 359 aaPredicted RBP16.95■□□□□ 0.3
CLN3-262ENST00000637699 TGFAP01135 160 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 OR12D1P0DN82 309 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 G6PDP11413 515 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 CDH2P19022 906 aaPredicted RBP16.95■□□□□ 0.3
CLN3-262ENST00000637699 IDH2P48735 452 aaKnown RBP16.95■□□□□ 0.3
CLN3-262ENST00000637699 CLK1P49759 484 aaKnown RBP16.95■□□□□ 0.3
CLN3-262ENST00000637699 PRPS1P60891 318 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 H3F3AP84243 136 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 TGFBR3Q03167 851 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 IQCCQ4KMZ1 466 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 OR4F3Q6IEY1 312 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 TYW3Q6IPR3 259 aaKnown RBP16.95■□□□□ 0.3
CLN3-262ENST00000637699 EMBQ6PCB8 327 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 ZCCHC23Q6ZST2 131 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 ANKS4BQ8N8V4 417 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 XAGE5Q8WWM1 108 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 RAB8BQ92930 207 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 ZG16BQ96DA0 208 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 VRK1Q99986 396 aaPredicted RBP16.95■□□□□ 0.3
CLN3-262ENST00000637699 TRAPPC4Q9Y296 219 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 SLC9A8Q9Y2E8 581 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 WDR45Q9Y484 360 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 FLVCR1Q9Y5Y0 555 aa16.95■□□□□ 0.3
CLN3-262ENST00000637699 CLDN24A6NM45 220 aa16.94■□□□□ 0.3
CLN3-262ENST00000637699 FKBP2P26885 142 aaKnown RBP16.94■□□□□ 0.3
CLN3-262ENST00000637699 SNRPD2P62316 118 aaKnown RBP16.94■□□□□ 0.3
CLN3-262ENST00000637699 ATAD3BQ5T9A4 648 aa16.94■□□□□ 0.3
CLN3-262ENST00000637699 LIPNQ5VXI9 398 aa16.94■□□□□ 0.3
CLN3-262ENST00000637699 KLHL24Q6TFL4 600 aa16.94■□□□□ 0.3
CLN3-262ENST00000637699 ARFGAP2Q8N6H7 521 aa16.94■□□□□ 0.3
CLN3-262ENST00000637699 OR4A15Q8NGL6 344 aa16.94■□□□□ 0.3
CLN3-262ENST00000637699 TUBGCP3Q96CW5 907 aa16.94■□□□□ 0.3
CLN3-262ENST00000637699 NAA11Q9BSU3 229 aaPredicted RBP16.94■□□□□ 0.3
CLN3-262ENST00000637699 TMED7-TICAM2A0A0A6YYA0 188 aa16.93■□□□□ 0.3
CLN3-262ENST00000637699 LOC390937A0A1W2PQ73 354 aa16.93■□□□□ 0.3
CLN3-262ENST00000637699 EIF1BO60739 113 aaKnown RBP16.93■□□□□ 0.3
CLN3-262ENST00000637699 WNT11O96014 354 aa16.93■□□□□ 0.3
CLN3-262ENST00000637699 IMPDH2P12268 514 aa16.93■□□□□ 0.3
CLN3-262ENST00000637699 MPGP29372 298 aa16.93■□□□□ 0.3
CLN3-262ENST00000637699 SLC35A1P78382 337 aa16.93■□□□□ 0.3
CLN3-262ENST00000637699 KCNJ10P78508 379 aa16.93■□□□□ 0.3
CLN3-262ENST00000637699 SQLEQ14534 574 aa16.93■□□□□ 0.3
CLN3-262ENST00000637699 HIKESHIQ53FT3 197 aa16.93■□□□□ 0.3
CLN3-262ENST00000637699 TNFAIP8L2Q6P589 184 aaPredicted RBP16.93■□□□□ 0.3
CLN3-262ENST00000637699 SLC46A3Q7Z3Q1 461 aa16.93■□□□□ 0.3
CLN3-262ENST00000637699 AENQ8WTP8 325 aaKnown RBP16.93■□□□□ 0.3
CLN3-262ENST00000637699 ROPN1LQ96C74 230 aa16.93■□□□□ 0.3
CLN3-262ENST00000637699 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.93■□□□□ 0.3
CLN3-262ENST00000637699 ZDHHC2Q9UIJ5 367 aa16.93■□□□□ 0.3
CLN3-262ENST00000637699 PCDHGB4Q9UN71 923 aa16.93■□□□□ 0.3
CLN3-262ENST00000637699 TMED7Q9Y3B3 224 aa16.93■□□□□ 0.3
CLN3-262ENST00000637699 V9GYY5 206 aaPredicted RBP16.93■□□□□ 0.3
CLN3-262ENST00000637699 AP3D1O14617 1153 aa16.92■□□□□ 0.3
CLN3-262ENST00000637699 AGR2O95994 175 aa16.92■□□□□ 0.3
CLN3-262ENST00000637699 NUDT17P0C025 328 aa16.92■□□□□ 0.3
CLN3-262ENST00000637699 ARRB2P32121 409 aa16.92■□□□□ 0.3
CLN3-262ENST00000637699 SERPINF1P36955 418 aa16.92■□□□□ 0.3
CLN3-262ENST00000637699 CLDN8P56748 225 aa16.92■□□□□ 0.3
CLN3-262ENST00000637699 PLAURQ03405 335 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms