RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 DTX3Q8N9I9 347 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 FAM98AQ8NCA5 519 aaKnown RBP11.73□□□□□ -0.53
LINC00540-203ENST00000631321 SDR9C7Q8NEX9 313 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 PHYHIPQ92561 330 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 SGTBQ96EQ0 304 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 CMTM3Q96MX0 182 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 C7orf50Q9BRJ6 194 aaKnown RBP11.73□□□□□ -0.53
LINC00540-203ENST00000631321 HS3ST3A1Q9Y663 406 aa11.73□□□□□ -0.53
LINC00540-203ENST00000631321 KIR2DS5A0A0G2JLQ3 304 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 A0A0G2JNG1 304 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 KIR2DS3K7RE56 304 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 ERVH48-1M5A8F1 160 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 CTDSPLO15194 276 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 GPR143P51810 404 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 PSMD4P55036 377 aaKnown RBP11.72□□□□□ -0.53
LINC00540-203ENST00000631321 LGALS3BPQ08380 585 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 KIR2DS5Q14953 304 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 FCN2Q15485 313 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 BCL2L15Q5TBC7 163 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 DPY19L2P2Q6ZN68 376 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 Q6ZSR6 202 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 ZNF767PQ75MW2 155 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 ARL14Q8N4G2 192 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 OR4N2Q8NGD1 307 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 OR4K13Q8NH42 304 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 RPS4Y2Q8TD47 263 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 CCDC3Q9BQI4 270 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 PBX4Q9BYU1 374 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 NMNAT2Q9BZQ4 307 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 EMC7Q9NPA0 242 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 MKKSQ9NPJ1 570 aaPredicted RBP11.72□□□□□ -0.53
LINC00540-203ENST00000631321 ZNF275Q9NSD4 429 aaPredicted RBP11.72□□□□□ -0.53
LINC00540-203ENST00000631321 STARD5Q9NSY2 213 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 COPZ2Q9P299 210 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 CAMK2AQ9UQM7 478 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 IER3IP1Q9Y5U9 82 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 ATG2BQ96BY7 2078 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 A0A1B0GTQ1 180 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 OR5K4A6NMS3 321 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 MCIDASD6RGH6 385 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 SMLR1H3BR10 107 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 ARPC3O15145 178 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 AKR7A2O43488 359 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 HCRTR1O43613 425 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 PPM1BO75688 479 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 TNFP01375 233 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 SNRPBP14678 240 aaKnown RBP11.72□□□□□ -0.53
LINC00540-203ENST00000631321 TPMTP51580 245 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 HCCSP53701 268 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 RAG2P55895 527 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 IGLV3-21P80748 117 aaPredicted RBP11.72□□□□□ -0.53
LINC00540-203ENST00000631321 SLC35D3Q5M8T2 416 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 C9orf50Q5SZB4 431 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 KIAA1324Q6UXG2 1013 aaKnown RBP11.72□□□□□ -0.53
LINC00540-203ENST00000631321 NPSR1Q6W5P4 371 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 C9orf62Q8N4C0 152 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 NPEPL1Q8NDH3 523 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 OR9A4Q8NGU2 314 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 MED28Q9H204 178 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 NCDNQ9UBB6 729 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 RABL2AQ9UBK7 228 aaPredicted RBP11.72□□□□□ -0.53
LINC00540-203ENST00000631321 SPATA2Q9UM82 520 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 RABL2BQ9UNT1 228 aa11.72□□□□□ -0.53
LINC00540-203ENST00000631321 A0A087WUJ7 227 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 SYNDIG1LA6NDD5 238 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 OR5K3A6NET4 321 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 EPOPA6NHQ4 379 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 TGFBR3LH3BV60 316 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 ZNF749O43361 778 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 TCRBP04435 133 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 HTR2BP41595 481 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 SRP9P49458 86 aaKnown RBP11.71□□□□□ -0.53
LINC00540-203ENST00000631321 PPP1CAP62136 330 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 HYAL1Q12794 435 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 FAM53BQ14153 422 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 PON3Q15166 354 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 CD276Q5ZPR3 534 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 FAM205BPQ63HN1 556 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 LYPD4Q6UWN0 246 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 KRT74Q7RTS7 529 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 TOMM5Q8N4H5 51 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 OR4D9Q8NGE8 314 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 SLC37A2Q8TED4 501 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 OR2M2Q96R28 347 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 GSDMCQ9BYG8 508 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 NRIP3Q9NQ35 241 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 NUDT15Q9NV35 164 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 RPS6KB2Q9UBS0 482 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 F5P12259 2224 aa11.71□□□□□ -0.53
LINC00540-203ENST00000631321 LRRN3E7EW58 273 aa11.71□□□□□ -0.54
LINC00540-203ENST00000631321 GPRIN2O60269 458 aa11.71□□□□□ -0.54
LINC00540-203ENST00000631321 STOMP27105 288 aa11.71□□□□□ -0.54
LINC00540-203ENST00000631321 GPLD1P80108 840 aa11.71□□□□□ -0.54
LINC00540-203ENST00000631321 MRPS21P82921 87 aaKnown RBP11.71□□□□□ -0.54
LINC00540-203ENST00000631321 DGCR2P98153 550 aa11.71□□□□□ -0.54
LINC00540-203ENST00000631321 TFF2Q03403 129 aa11.71□□□□□ -0.54
LINC00540-203ENST00000631321 HSF2Q03933 536 aa11.71□□□□□ -0.54
LINC00540-203ENST00000631321 C19orf57Q0VDD7 668 aa11.71□□□□□ -0.54
LINC00540-203ENST00000631321 IL10RAQ13651 578 aa11.71□□□□□ -0.54
LINC00540-203ENST00000631321 ANGPT1Q15389 498 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms