RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 QPRTQ15274 297 aa16.8■□□□□ 0.28
CDX1-202ENST00000616154 ETFDHQ16134 617 aa16.8■□□□□ 0.28
CDX1-202ENST00000616154 OLIG3Q7RTU3 272 aa16.8■□□□□ 0.28
CDX1-202ENST00000616154 ZNF614Q8N883 585 aa16.8■□□□□ 0.28
CDX1-202ENST00000616154 KISS1RQ969F8 398 aaPredicted RBP16.8■□□□□ 0.28
CDX1-202ENST00000616154 FBXW5Q969U6 566 aa16.8■□□□□ 0.28
CDX1-202ENST00000616154 SLC38A1Q9H2H9 487 aa16.8■□□□□ 0.28
CDX1-202ENST00000616154 BCO1Q9HAY6 547 aa16.8■□□□□ 0.28
CDX1-202ENST00000616154 SLC6A13Q9NSD5 602 aa16.8■□□□□ 0.28
CDX1-202ENST00000616154 CAPN7Q9Y6W3 813 aa16.8■□□□□ 0.28
CDX1-202ENST00000616154 CR1P17927 2039 aa16.8■□□□□ 0.28
CDX1-202ENST00000616154 CLOCKO15516 846 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 H6PDO95479 791 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 KRT75O95678 551 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 SOD3P08294 240 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 DANCRP0C864 163 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 ENPP1P22413 925 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 POLR2JP52435 117 aaKnown RBP16.79■□□□□ 0.28
CDX1-202ENST00000616154 RAC3P60763 192 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 KRTAP1-1Q07627 177 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 ITGADQ13349 1161 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 AGKQ53H12 422 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 SEZ6L2Q6UXD5 910 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 LRRC74BQ6ZQY2 392 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 ZNF621Q6ZSS3 439 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 TRPM8Q7Z2W7 1104 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 CMIPQ8IY22 773 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 ATP6V1C2Q8NEY4 427 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 ZG16BQ96DA0 208 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 MDFIQ99750 246 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 PSD2Q9BQI7 771 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 KLHL9Q9P2J3 617 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 ING1Q9UK53 422 aaPredicted RBP16.79■□□□□ 0.28
CDX1-202ENST00000616154 ABCA1O95477 2261 aa16.79■□□□□ 0.28
CDX1-202ENST00000616154 RTTNQ86VV8 2226 aa16.78■□□□□ 0.28
CDX1-202ENST00000616154 AGAP5A6NIR3 686 aa16.78■□□□□ 0.28
CDX1-202ENST00000616154 ZNF814B7Z6K7 855 aa16.78■□□□□ 0.28
CDX1-202ENST00000616154 CHRM4P08173 479 aa16.78■□□□□ 0.28
CDX1-202ENST00000616154 HOXB9P17482 250 aaPredicted RBP16.78■□□□□ 0.28
CDX1-202ENST00000616154 PRDX6P30041 224 aa16.78■□□□□ 0.28
CDX1-202ENST00000616154 SLC7A1P30825 629 aa16.78■□□□□ 0.28
CDX1-202ENST00000616154 OR3A2P47893 321 aa16.78■□□□□ 0.28
CDX1-202ENST00000616154 CHRNEQ04844 493 aa16.78■□□□□ 0.28
CDX1-202ENST00000616154 KRT72Q14CN4 511 aa16.78■□□□□ 0.28
CDX1-202ENST00000616154 MAPK11Q15759 364 aa16.78■□□□□ 0.28
CDX1-202ENST00000616154 CLEC12BQ2HXU8 276 aa16.78■□□□□ 0.28
CDX1-202ENST00000616154 ZNF672Q499Z4 452 aaPredicted RBP16.78■□□□□ 0.28
CDX1-202ENST00000616154 COX20Q5RI15 118 aa16.78■□□□□ 0.28
CDX1-202ENST00000616154 DNAJC14Q6Y2X3 702 aaPredicted RBP16.78■□□□□ 0.28
CDX1-202ENST00000616154 Q6ZT83 130 aa16.78■□□□□ 0.28
CDX1-202ENST00000616154 BHLHA15Q7RTS1 189 aaPredicted RBP16.78■□□□□ 0.28
CDX1-202ENST00000616154 TMCO5AQ8N6Q1 288 aa16.78■□□□□ 0.28
CDX1-202ENST00000616154 ANKFN1Q8N957 763 aa16.78■□□□□ 0.28
CDX1-202ENST00000616154 TRMT61AQ96FX7 289 aaKnown RBP16.78■□□□□ 0.28
CDX1-202ENST00000616154 RMND5AQ9H871 391 aa16.78■□□□□ 0.28
CDX1-202ENST00000616154 ACER3Q9NUN7 267 aa16.78■□□□□ 0.28
CDX1-202ENST00000616154 CCDC167Q9P0B6 97 aa16.78■□□□□ 0.28
CDX1-202ENST00000616154 PLCE1Q9P212 2302 aa16.78■□□□□ 0.28
CDX1-202ENST00000616154 DSPPQ9NZW4 1301 aa16.78■□□□□ 0.28
CDX1-202ENST00000616154 FBN3Q75N90 2809 aa16.77■□□□□ 0.28
CDX1-202ENST00000616154 IGHV3-15A0A0B4J1V0 119 aa16.77■□□□□ 0.28
CDX1-202ENST00000616154 A0A1W2PNR3 127 aa16.77■□□□□ 0.28
CDX1-202ENST00000616154 BCAS1O75363 584 aaPredicted RBP16.77■□□□□ 0.28
CDX1-202ENST00000616154 GSNP06396 782 aa16.77■□□□□ 0.28
CDX1-202ENST00000616154 UBTFL6P0CB48 400 aaPredicted RBP16.77■□□□□ 0.28
CDX1-202ENST00000616154 PGCP20142 388 aa16.77■□□□□ 0.28
CDX1-202ENST00000616154 SESN3P58005 492 aa16.77■□□□□ 0.28
CDX1-202ENST00000616154 KCNJ10P78508 379 aa16.77■□□□□ 0.28
CDX1-202ENST00000616154 HPCAP84074 193 aa16.77■□□□□ 0.28
CDX1-202ENST00000616154 BSPH1Q075Z2 132 aa16.77■□□□□ 0.28
CDX1-202ENST00000616154 SYPL1Q16563 259 aa16.77■□□□□ 0.28
CDX1-202ENST00000616154 TIGD2Q4W5G0 525 aa16.77■□□□□ 0.28
CDX1-202ENST00000616154 C3orf33Q6P1S2 294 aa16.77■□□□□ 0.28
CDX1-202ENST00000616154 SMAP2Q8WU79 429 aaPredicted RBP16.77■□□□□ 0.28
CDX1-202ENST00000616154 TMEM234Q8WY98 164 aa16.77■□□□□ 0.28
CDX1-202ENST00000616154 GTF2H4Q92759 462 aa16.77■□□□□ 0.28
CDX1-202ENST00000616154 NEUROG1Q92886 237 aa16.77■□□□□ 0.28
CDX1-202ENST00000616154 ITCHQ96J02 903 aa16.77■□□□□ 0.28
CDX1-202ENST00000616154 THUMPD3Q9BV44 507 aaKnown RBP16.77■□□□□ 0.28
CDX1-202ENST00000616154 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.77■□□□□ 0.28
CDX1-202ENST00000616154 PRDM4Q9UKN5 801 aa16.77■□□□□ 0.28
CDX1-202ENST00000616154 GMEB1Q9Y692 573 aa16.77■□□□□ 0.28
CDX1-202ENST00000616154 CCT8L1PA6NM43 557 aa16.76■□□□□ 0.27
CDX1-202ENST00000616154 FAAHO00519 579 aa16.76■□□□□ 0.27
CDX1-202ENST00000616154 SMAD9O15198 467 aaKnown RBP16.76■□□□□ 0.27
CDX1-202ENST00000616154 CYTIPO60759 359 aa16.76■□□□□ 0.27
CDX1-202ENST00000616154 IDUAP35475 653 aa16.76■□□□□ 0.27
CDX1-202ENST00000616154 CCR4P51679 360 aa16.76■□□□□ 0.27
CDX1-202ENST00000616154 RASGEF1BQ0VAM2 473 aa16.76■□□□□ 0.27
CDX1-202ENST00000616154 VEZF1Q14119 521 aa16.76■□□□□ 0.27
CDX1-202ENST00000616154 MAPRE2Q15555 327 aa16.76■□□□□ 0.27
CDX1-202ENST00000616154 GPAT3Q53EU6 434 aa16.76■□□□□ 0.27
CDX1-202ENST00000616154 COQ5Q5HYK3 327 aa16.76■□□□□ 0.27
CDX1-202ENST00000616154 ATG4DQ86TL0 474 aaPredicted RBP16.76■□□□□ 0.27
CDX1-202ENST00000616154 KBTBD8Q8NFY9 601 aa16.76■□□□□ 0.27
CDX1-202ENST00000616154 RP9Q8TA86 221 aaKnown RBP16.76■□□□□ 0.27
CDX1-202ENST00000616154 GTPBP3Q969Y2 492 aaKnown RBP16.76■□□□□ 0.27
CDX1-202ENST00000616154 SPDL1Q96EA4 605 aa16.76■□□□□ 0.27
CDX1-202ENST00000616154 MTHFD2LQ9H903 347 aaPredicted RBP16.76■□□□□ 0.27
CDX1-202ENST00000616154 TPT1P8Q9HAU6 139 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms