RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 CLDN1O95832 211 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 TMIGD3P0DMS9 266 aaPredicted RBP14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 FCGR2AP12318 317 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 TCN1P20061 433 aaPredicted RBP14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 DIO1P49895 249 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 FOXF2Q12947 444 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 BNIP2Q12982 314 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 MYBPHQ13203 477 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 OR1Q1Q15612 314 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 ZNF239Q16600 458 aaKnown RBP14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 SPATS1Q496A3 300 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 PPP4R4Q6NUP7 873 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 ULK3Q6PHR2 472 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 GCNT2Q8N0V5 402 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 DNAJA4Q8WW22 397 aaPredicted RBP14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 DDIT4LQ96D03 193 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 C12orf10Q9HB07 376 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 TMEM27Q9HBJ8 222 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 ZNF629Q9UEG4 869 aaPredicted RBP14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 HDGFL3Q9Y3E1 203 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 CACNA1CQ13936 2221 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 A0A0B4J2E0 115 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 A0A1B0GX12 115 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 A1L4Q6 167 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 SULT2B1O00204 365 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 TNFRSF1BP20333 461 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 CTSSP25774 331 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 CEACAM7Q14002 265 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 ALG10BQ5I7T1 473 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 GLYATQ6IB77 296 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 OR2A2Q6IF42 318 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 CBLL1Q75N03 491 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 CARM1Q86X55 608 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 ROBO4Q8WZ75 1007 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 DNAJA3Q96EY1 480 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 TPD52L3Q96J77 140 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 PRRG4Q9BZD6 226 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 PCDHAC1Q9H158 963 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 C1orf21Q9H246 121 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 ADPRHL2Q9NX46 363 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 TAS2R1Q9NYW7 299 aa14.81□□□□□ -0.04
CCDC28A-202ENST00000611852 MPDZO75970 2070 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 ELOA3DA6NLF2 546 aaPredicted RBP14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 A8MVM7 634 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 PMS2P2O95744 297 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 SERPINA1P01009 418 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 BMP5P22003 454 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 ENPP1P22413 925 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 MSX2P35548 267 aaPredicted RBP14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 OR1E2P47887 323 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 CDH12P55289 794 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 CSNK2A1P68400 391 aaPredicted RBP14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 ELOA3BQ3SY89 546 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 ENTPD8Q5MY95 495 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 ZNF613Q6PF04 617 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 VTCN1Q7Z7D3 282 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 TSPYL5Q86VY4 417 aaPredicted RBP14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 ELOA3Q8NG57 546 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 ADAMTS16Q8TE57 1224 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 RNF128Q8TEB7 428 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 LZICQ8WZA0 190 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 SLC38A4Q969I6 547 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 FAM162AQ96A26 154 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 SLC47A1Q96FL8 570 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 SFXN3Q9BWM7 321 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 POTEKPQ9BYX7 375 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 UCK2Q9BZX2 261 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 TRAPPC4Q9Y296 219 aa14.8□□□□□ -0.04
CCDC28A-202ENST00000611852 CPSF4LA6NMK7 179 aaKnown RBP14.79□□□□□ -0.04
CCDC28A-202ENST00000611852 DVL2O14641 736 aa14.79□□□□□ -0.04
CCDC28A-202ENST00000611852 NPIPB7O75200 414 aa14.79□□□□□ -0.04
CCDC28A-202ENST00000611852 TNFSF13O75888 250 aa14.79□□□□□ -0.04
CCDC28A-202ENST00000611852 ZNF682O95780 498 aa14.79□□□□□ -0.04
CCDC28A-202ENST00000611852 IL18BPO95998 194 aa14.79□□□□□ -0.04
CCDC28A-202ENST00000611852 CRHP06850 196 aa14.79□□□□□ -0.04
CCDC28A-202ENST00000611852 PNMTP11086 282 aa14.79□□□□□ -0.04
CCDC28A-202ENST00000611852 IMPDH2P12268 514 aa14.79□□□□□ -0.04
CCDC28A-202ENST00000611852 OPRM1P35372 400 aa14.79□□□□□ -0.04
CCDC28A-202ENST00000611852 AGFG1P52594 562 aaKnown RBP14.79□□□□□ -0.04
CCDC28A-202ENST00000611852 EGR4Q05215 589 aa14.79□□□□□ -0.04
CCDC28A-202ENST00000611852 SWT1Q5T5J6 900 aaKnown RBP14.79□□□□□ -0.04
CCDC28A-202ENST00000611852 ARHGAP24Q8N264 748 aa14.79□□□□□ -0.04
CCDC28A-202ENST00000611852 GORASP2Q9H8Y8 452 aa14.79□□□□□ -0.04
CCDC28A-202ENST00000611852 SELENONQ9NZV5 590 aa14.79□□□□□ -0.04
CCDC28A-202ENST00000611852 KLF2Q9Y5W3 355 aaPredicted RBP14.79□□□□□ -0.04
CCDC28A-202ENST00000611852 A0A087WUJ7 227 aa14.78□□□□□ -0.04
CCDC28A-202ENST00000611852 IGHV3-15A0A0B4J1V0 119 aa14.78□□□□□ -0.04
CCDC28A-202ENST00000611852 A0A1W2PNV4 684 aa14.78□□□□□ -0.04
CCDC28A-202ENST00000611852 NKX2-6A6NCS4 301 aa14.78□□□□□ -0.04
CCDC28A-202ENST00000611852 FAM90A27PA6NNH2 459 aa14.78□□□□□ -0.04
CCDC28A-202ENST00000611852 SMAD9O15198 467 aaKnown RBP14.78□□□□□ -0.04
CCDC28A-202ENST00000611852 GMNNO75496 209 aa14.78□□□□□ -0.04
CCDC28A-202ENST00000611852 UTP20O75691 2785 aaKnown RBP14.78□□□□□ -0.04
CCDC28A-202ENST00000611852 THY1P04216 161 aa14.78□□□□□ -0.04
CCDC28A-202ENST00000611852 KLK2P20151 261 aa14.78□□□□□ -0.04
CCDC28A-202ENST00000611852 GUSBP1Q15486 140 aa14.78□□□□□ -0.04
CCDC28A-202ENST00000611852 SLC25A35Q3KQZ1 300 aa14.78□□□□□ -0.04
CCDC28A-202ENST00000611852 FCRLAQ7L513 359 aa14.78□□□□□ -0.04
CCDC28A-202ENST00000611852 MAMDC2Q7Z304 686 aaPredicted RBP14.78□□□□□ -0.04
CCDC28A-202ENST00000611852 RELL2Q8NC24 303 aaPredicted RBP14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 737.4 ms