RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 ZNF563Q8TA94 476 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 FBXO30Q8TB52 745 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 NEU4Q8WWR8 484 aaPredicted RBP5.52□□□□□ -1.53
CUX1-220ENST00000607092 CDS1Q92903 461 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 CIDECQ96AQ7 238 aaPredicted RBP5.52□□□□□ -1.53
CUX1-220ENST00000607092 DDIT4LQ96D03 193 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 MSI2Q96DH6 328 aaKnown RBP5.52□□□□□ -1.53
CUX1-220ENST00000607092 C16orf58Q96GQ5 468 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 BOD1Q96IK1 185 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 EGLN2Q96KS0 407 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 JMJD8Q96S16 334 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 RHOXF2Q9BQY4 288 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 KATNB1Q9BVA0 655 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 EXOSC3Q9NQT5 275 aaKnown RBP5.52□□□□□ -1.53
CUX1-220ENST00000607092 SLC17A5Q9NRA2 495 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 TMEM45AQ9NWC5 275 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 OXSMQ9NWU1 459 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 TMEM181Q9P2C4 612 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 ING1Q9UK53 422 aaPredicted RBP5.52□□□□□ -1.53
CUX1-220ENST00000607092 CCL27Q9Y4X3 112 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 MALRD1Q5VYJ5 2156 aa5.52□□□□□ -1.53
CUX1-220ENST00000607092 IGHV3-15A0A0B4J1V0 119 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 ZNF716A6NP11 495 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 NPIPB9F8W1W9 429 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 SCAMP2O15127 329 aaKnown RBP5.51□□□□□ -1.53
CUX1-220ENST00000607092 ZNF208O43345 1280 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 SPRY1O43609 319 aaPredicted RBP5.51□□□□□ -1.53
CUX1-220ENST00000607092 CYP7B1O75881 506 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 KRT33AO76009 404 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 H6PDO95479 791 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 FGF4P08620 206 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 BCKDHAP12694 445 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 CPA3P15088 417 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 GIFP27352 417 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 SERPINB5P36952 375 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 FOXA1P55317 472 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 SH3BGRP55822 239 aaPredicted RBP5.51□□□□□ -1.53
CUX1-220ENST00000607092 SESN3P58005 492 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 UBE2NP61088 152 aaKnown RBP5.51□□□□□ -1.53
CUX1-220ENST00000607092 VSNL1P62760 191 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 SKP2Q13309 424 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 EFNB3Q15768 340 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 CARTPTQ16568 116 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 ZSWIM7Q19AV6 140 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 PRSS53Q2L4Q9 553 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 CR1LQ2VPA4 569 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 ATP6AP1LQ52LC2 224 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 PDZK1Q5T2W1 519 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 UBAP2Q5T6F2 1119 aaKnown RBP5.51□□□□□ -1.53
CUX1-220ENST00000607092 PAQR6Q6TCH4 344 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 C16orf62Q7Z3J2 963 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 ZAR1Q86SH2 424 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 ATG4DQ86TL0 474 aaPredicted RBP5.51□□□□□ -1.53
CUX1-220ENST00000607092 DDIASQ8IXT1 998 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 CMIPQ8IY22 773 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 CCDC36Q8IYA8 594 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 KIRREL3Q8IZU9 778 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 FAM169BQ8N8A8 192 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 LINC01356Q8N9X3 169 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 IL17RDQ8NFM7 739 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 ZNF418Q8TF45 676 aaPredicted RBP5.51□□□□□ -1.53
CUX1-220ENST00000607092 ZNF75CPQ92670 426 aaPredicted RBP5.51□□□□□ -1.53
CUX1-220ENST00000607092 TMEM45BQ96B21 275 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 FBXO17Q96EF6 278 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 ANKRD27Q96NW4 1050 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 ZNF300Q96RE9 604 aaPredicted RBP5.51□□□□□ -1.53
CUX1-220ENST00000607092 SDF2Q99470 211 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 NPAS1Q99742 590 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 VRK1Q99986 396 aaPredicted RBP5.51□□□□□ -1.53
CUX1-220ENST00000607092 THUMPD3Q9BV44 507 aaKnown RBP5.51□□□□□ -1.53
CUX1-220ENST00000607092 SF3B5Q9BWJ5 86 aaKnown RBP5.51□□□□□ -1.53
CUX1-220ENST00000607092 BHLHE41Q9C0J9 482 aaPredicted RBP5.51□□□□□ -1.53
CUX1-220ENST00000607092 ADAM19Q9H013 955 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 C12orf65Q9H3J6 166 aaKnown RBP5.51□□□□□ -1.53
CUX1-220ENST00000607092 ZNF446Q9NWS9 450 aa5.51□□□□□ -1.53
CUX1-220ENST00000607092 TMEFF2Q9UIK5 374 aaPredicted RBP5.51□□□□□ -1.53
CUX1-220ENST00000607092 HEATR1Q9H583 2144 aaKnown RBP5.51□□□□□ -1.53
CUX1-220ENST00000607092 PCNX3Q9H6A9 2034 aa5.5□□□□□ -1.53
CUX1-220ENST00000607092 B4DSR2 109 aa5.5□□□□□ -1.53
CUX1-220ENST00000607092 C9JVG2 144 aa5.5□□□□□ -1.53
CUX1-220ENST00000607092 ZNF587BE7ETH6 402 aa5.5□□□□□ -1.53
CUX1-220ENST00000607092 G3V2L1 256 aa5.5□□□□□ -1.53
CUX1-220ENST00000607092 PDLIM1O00151 329 aa5.5□□□□□ -1.53
CUX1-220ENST00000607092 COPEO14579 308 aa5.5□□□□□ -1.53
CUX1-220ENST00000607092 LSM1O15116 133 aaKnown RBP5.5□□□□□ -1.53
CUX1-220ENST00000607092 CFLARO15519 480 aa5.5□□□□□ -1.53
CUX1-220ENST00000607092 PLIN3O60664 434 aa5.5□□□□□ -1.53
CUX1-220ENST00000607092 TRIM13O60858 407 aa5.5□□□□□ -1.53
CUX1-220ENST00000607092 PROCP04070 461 aa5.5□□□□□ -1.53
CUX1-220ENST00000607092 TACSTD2P09758 323 aa5.5□□□□□ -1.53
CUX1-220ENST00000607092 UBTFL6P0CB48 400 aaPredicted RBP5.5□□□□□ -1.53
CUX1-220ENST00000607092 PTNP21246 168 aa5.5□□□□□ -1.53
CUX1-220ENST00000607092 MATN1P21941 496 aa5.5□□□□□ -1.53
CUX1-220ENST00000607092 APEX1P27695 318 aaKnown RBP5.5□□□□□ -1.53
CUX1-220ENST00000607092 CRHR1P34998 444 aa5.5□□□□□ -1.53
CUX1-220ENST00000607092 SOAT1P35610 550 aa5.5□□□□□ -1.53
CUX1-220ENST00000607092 LIMS1P48059 325 aa5.5□□□□□ -1.53
CUX1-220ENST00000607092 IDH3GP51553 393 aaPredicted RBP5.5□□□□□ -1.53
CUX1-220ENST00000607092 POLR2HP52434 150 aaKnown RBP5.5□□□□□ -1.53
CUX1-220ENST00000607092 OR2B6P58173 313 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms