RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 A8MVM7 634 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 EBAG9O00559 213 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 GSC2O15499 205 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 PRKD3O94806 890 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 TGM6O95932 706 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 LDLRP01130 860 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 CEACAM8P31997 349 aaPredicted RBP17.34■□□□□ 0.37
UPF1-209ENST00000600310 CDH12P55289 794 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 RAC3P60763 192 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 MS4A2Q01362 244 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 MYBPHQ13203 477 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 PON3Q15166 354 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 ELOA3BQ3SY89 546 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 LCN8Q6JVE9 175 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 PLXDC2Q6UX71 529 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 DEF8Q6ZN54 512 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 C9orf106Q8NAJ2 232 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 ELOA3Q8NG57 546 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 STK35Q8TDR2 534 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 CPNE4Q96A23 557 aaPredicted RBP17.34■□□□□ 0.37
UPF1-209ENST00000600310 ASB9Q96DX5 294 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 PYURFQ96I23 114 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 TM9SF2Q99805 663 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 CADM1Q9BY67 442 aaKnown RBP17.34■□□□□ 0.37
UPF1-209ENST00000600310 SRXN1Q9BYN0 137 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 AMBRA1Q9C0C7 1298 aa17.34■□□□□ 0.37
UPF1-209ENST00000600310 HIVEP3Q5T1R4 2406 aa17.33■□□□□ 0.37
UPF1-209ENST00000600310 CHP2O43745 196 aa17.33■□□□□ 0.36
UPF1-209ENST00000600310 ZG16O60844 167 aa17.33■□□□□ 0.36
UPF1-209ENST00000600310 NPIPB7O75200 414 aa17.33■□□□□ 0.36
UPF1-209ENST00000600310 LYPD3O95274 346 aa17.33■□□□□ 0.36
UPF1-209ENST00000600310 SYNGR4O95473 234 aa17.33■□□□□ 0.36
UPF1-209ENST00000600310 PMS2P2O95744 297 aa17.33■□□□□ 0.36
UPF1-209ENST00000600310 THY1P04216 161 aa17.33■□□□□ 0.36
UPF1-209ENST00000600310 IFNW1P05000 195 aa17.33■□□□□ 0.36
UPF1-209ENST00000600310 ATP6V1B2P21281 511 aa17.33■□□□□ 0.36
UPF1-209ENST00000600310 DIO1P49895 249 aa17.33■□□□□ 0.36
UPF1-209ENST00000600310 SMSP52788 366 aa17.33■□□□□ 0.36
UPF1-209ENST00000600310 TRAP1Q12931 704 aaKnown RBP17.33■□□□□ 0.36
UPF1-209ENST00000600310 P4HA3Q7Z4N8 544 aa17.33■□□□□ 0.36
UPF1-209ENST00000600310 LSRQ86X29 649 aaPredicted RBP17.33■□□□□ 0.36
UPF1-209ENST00000600310 DHFR2Q86XF0 187 aa17.33■□□□□ 0.36
UPF1-209ENST00000600310 FAM86B1Q8N7N1 296 aa17.33■□□□□ 0.36
UPF1-209ENST00000600310 FNDC9Q8TBE3 224 aa17.33■□□□□ 0.36
UPF1-209ENST00000600310 CCDC124Q96CT7 223 aaKnown RBP17.33■□□□□ 0.36
UPF1-209ENST00000600310 MCTS1Q9ULC4 181 aaKnown RBP17.33■□□□□ 0.36
UPF1-209ENST00000600310 TRAPPC4Q9Y296 219 aa17.33■□□□□ 0.36
UPF1-209ENST00000600310 MYO7BQ6PIF6 2116 aa17.33■□□□□ 0.36
UPF1-209ENST00000600310 HECTD1Q9ULT8 2610 aa17.33■□□□□ 0.36
UPF1-209ENST00000600310 PRRC2CQ9Y520 2896 aaKnown RBP17.32■□□□□ 0.36
UPF1-209ENST00000600310 IGKV1D-42A0A075B6H8 117 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 A0A0G2JNJ9 132 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 SULT2B1O00204 365 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 AQP8O94778 261 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 RCBTB2O95199 551 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 OR5F1O95221 314 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 IL2RAP01589 272 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 IMPDH2P12268 514 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 FCGR2AP12318 317 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 TAS2R41P59536 307 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 CSNK2A1P68400 391 aaPredicted RBP17.32■□□□□ 0.36
UPF1-209ENST00000600310 EGR4Q05215 589 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 PIN1Q13526 163 aaPredicted RBP17.32■□□□□ 0.36
UPF1-209ENST00000600310 ZNF239Q16600 458 aaKnown RBP17.32■□□□□ 0.36
UPF1-209ENST00000600310 MTX3Q5HYI7 312 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 C5orf46Q6UWT4 87 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 CYP2R1Q6VVX0 501 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 LINC00114Q6XXX2 140 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 CCDC121Q6ZUS5 278 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 RNF217Q8TC41 542 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 SSC4DQ8WTU2 575 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 SLC41A3Q96GZ6 507 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 PRRC1Q96M27 445 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 ZFP3Q96NJ6 502 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 PRRG4Q9BZD6 226 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 LRMDAQ9H2I8 198 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 RNF122Q9H9V4 155 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 Q9UFV3 132 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 A4GNTQ9UNA3 340 aa17.32■□□□□ 0.36
UPF1-209ENST00000600310 UBR5O95071 2799 aaPredicted RBP17.32■□□□□ 0.36
UPF1-209ENST00000600310 MAST4O15021 2626 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 HSPB2A8KAH6 182 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 CYSRT1A8MQ03 144 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 ACOT8O14734 319 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 DNPH1O43598 174 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 RNF224P0DH78 156 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 THRBP10828 461 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 AGAP20933 346 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 IDUAP35475 653 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 AGFG1P52594 562 aaKnown RBP17.31■□□□□ 0.36
UPF1-209ENST00000600310 HSPB2Q16082 182 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 C1orf140Q5VVS0 124 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 OR2A2Q6IF42 318 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 XKRXQ6PP77 449 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 GDF7Q7Z4P5 450 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 TSEN54Q7Z6J9 526 aaKnown RBP17.31■□□□□ 0.36
UPF1-209ENST00000600310 MRGPRGQ86SM5 289 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 ZNF808Q8N4W9 903 aaPredicted RBP17.31■□□□□ 0.36
UPF1-209ENST00000600310 NAXEQ8NCW5 288 aa17.31■□□□□ 0.36
UPF1-209ENST00000600310 ITLN2Q8WWU7 325 aaPredicted RBP17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms