RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 DDIT4LQ96D03 193 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 ARHGDIGQ99819 225 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 KLHL28Q9NXS3 571 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 GALNT8Q9NY28 637 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 ING1Q9UK53 422 aaPredicted RBP13.57□□□□□ -0.24
LIG1-219ENST00000600055 SLC13A4Q9UKG4 626 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 PROCRQ9UNN8 238 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 EMC9Q9Y3B6 208 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 HDGFL3Q9Y3E1 203 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 HCFC1P51610 2035 aa13.57□□□□□ -0.24
LIG1-219ENST00000600055 SETXQ7Z333 2677 aaKnown RBP13.57□□□□□ -0.24
LIG1-219ENST00000600055 A0A1B0GWA3 101 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 ZNF814B7Z6K7 855 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 NME4O00746 187 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 PRKD3O94806 890 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 FKBP2P26885 142 aaKnown RBP13.56□□□□□ -0.24
LIG1-219ENST00000600055 AGTR1P30556 359 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 CPOXP36551 454 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 CLK1P49759 484 aaKnown RBP13.56□□□□□ -0.24
LIG1-219ENST00000600055 CSNK2A1P68400 391 aaPredicted RBP13.56□□□□□ -0.24
LIG1-219ENST00000600055 LIPEQ05469 1076 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 NPTX1Q15818 432 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 NRF1Q16656 503 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 GTF2IRD2BQ6EKJ0 949 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 ERICH5Q6P6B1 374 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 HACD2Q6Y1H2 254 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 NUFIP2Q7Z417 695 aaKnown RBP13.56□□□□□ -0.24
LIG1-219ENST00000600055 ARPINQ7Z6K5 226 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 GTF2IRD2Q86UP8 949 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 RBM45Q8IUH3 476 aaKnown RBP13.56□□□□□ -0.24
LIG1-219ENST00000600055 MICU2Q8IYU8 434 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 BHLHE22Q8NFJ8 381 aaPredicted RBP13.56□□□□□ -0.24
LIG1-219ENST00000600055 OR2T12Q8NG77 320 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 OR52E4Q8NGH9 312 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 VANGL1Q8TAA9 524 aaPredicted RBP13.56□□□□□ -0.24
LIG1-219ENST00000600055 SLC26A7Q8TE54 656 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 ZNF775Q96BV0 537 aaPredicted RBP13.56□□□□□ -0.24
LIG1-219ENST00000600055 LRRC46Q96FV0 321 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 HOPXQ9BPY8 73 aaPredicted RBP13.56□□□□□ -0.24
LIG1-219ENST00000600055 PSD2Q9BQI7 771 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 C12orf49Q9H741 205 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 GLRX2Q9NS18 164 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 ARL8BQ9NVJ2 186 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 TMEM181Q9P2C4 612 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 RPS6KB2Q9UBS0 482 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 PRDM4Q9UKN5 801 aa13.56□□□□□ -0.24
LIG1-219ENST00000600055 ELOVL7A1L3X0 281 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 TMEM229AB2RXF0 380 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 CYTIPO60759 359 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 RAMP1O60894 148 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 SHOX2O60902 331 aaPredicted RBP13.55□□□□□ -0.24
LIG1-219ENST00000600055 DCTN3O75935 186 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 FAM107AO95990 144 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 CD8BP10966 210 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 FPR1P21462 350 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 PSME3P61289 254 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 NCALDP61601 193 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 FAM27E3Q08E93 113 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 RASGEF1BQ0VAM2 473 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 VEZF1Q14119 521 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 RNPS1Q15287 305 aaKnown RBP13.55□□□□□ -0.24
LIG1-219ENST00000600055 OR1Q1Q15612 314 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 CCDC103Q8IW40 242 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 SLC43A2Q8N370 569 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 LSMEM1Q8N8F7 131 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 ANKS4BQ8N8V4 417 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 OR6T1Q8NGN1 323 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 OR6K3Q8NGY3 331 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 LINC01560Q8TB33 94 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 LRRC37BQ96QE4 947 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 ZNF300Q96RE9 604 aaPredicted RBP13.55□□□□□ -0.24
LIG1-219ENST00000600055 ZNF559Q9BR84 538 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 TRIM2Q9C040 744 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 PLSCR4Q9NRQ2 329 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 KLHL13Q9P2N7 655 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 TESQ9UGI8 421 aaKnown RBP13.55□□□□□ -0.24
LIG1-219ENST00000600055 FOXD3Q9UJU5 478 aaPredicted RBP13.55□□□□□ -0.24
LIG1-219ENST00000600055 TRAPPC4Q9Y296 219 aa13.55□□□□□ -0.24
LIG1-219ENST00000600055 INTS1Q8N201 2190 aaKnown RBP13.54□□□□□ -0.24
LIG1-219ENST00000600055 ELOA3DA6NLF2 546 aaPredicted RBP13.54□□□□□ -0.24
LIG1-219ENST00000600055 A8MVM7 634 aa13.54□□□□□ -0.24
LIG1-219ENST00000600055 C8BP07358 591 aa13.54□□□□□ -0.24
LIG1-219ENST00000600055 YES1P07947 543 aa13.54□□□□□ -0.24
LIG1-219ENST00000600055 TNFRSF1BP20333 461 aa13.54□□□□□ -0.24
LIG1-219ENST00000600055 IDUAP35475 653 aa13.54□□□□□ -0.24
LIG1-219ENST00000600055 GSK3BP49841 420 aa13.54□□□□□ -0.24
LIG1-219ENST00000600055 MAP2K6P52564 334 aa13.54□□□□□ -0.24
LIG1-219ENST00000600055 EGR4Q05215 589 aa13.54□□□□□ -0.24
LIG1-219ENST00000600055 CEACAM7Q14002 265 aa13.54□□□□□ -0.24
LIG1-219ENST00000600055 OR7A5Q15622 319 aa13.54□□□□□ -0.24
LIG1-219ENST00000600055 EXOC3L2Q2M3D2 409 aa13.54□□□□□ -0.24
LIG1-219ENST00000600055 ELOA3BQ3SY89 546 aa13.54□□□□□ -0.24
LIG1-219ENST00000600055 LRRC23Q53EV4 343 aaPredicted RBP13.54□□□□□ -0.24
LIG1-219ENST00000600055 TMEM201Q5SNT2 666 aa13.54□□□□□ -0.24
LIG1-219ENST00000600055 GKAP1Q5VSY0 366 aaPredicted RBP13.54□□□□□ -0.24
LIG1-219ENST00000600055 ABLIM2Q6H8Q1 611 aa13.54□□□□□ -0.24
LIG1-219ENST00000600055 P3H2Q8IVL5 708 aa13.54□□□□□ -0.24
LIG1-219ENST00000600055 ELOA3Q8NG57 546 aa13.54□□□□□ -0.24
LIG1-219ENST00000600055 RNF217Q8TC41 542 aa13.54□□□□□ -0.24
LIG1-219ENST00000600055 MCHR1Q99705 422 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms