RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 CA5BQ9Y2D0 317 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 TMED7Q9Y3B3 224 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 TIMM8BQ9Y5J9 83 aaPredicted RBP19.06■□□□□ 0.64
UPF1-207ENST00000599848 DVL2O14641 736 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 P2RX6O15547 441 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 AKAIN1P0CW23 69 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 PARM1Q6UWI2 310 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 SDR9C7Q8NEX9 313 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 OR6F1Q8NGZ6 308 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 OR52D1Q9H346 318 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 C19orf12Q9NSK7 152 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 PEAK1Q9H792 1746 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 TRGV8A0A0C4DH27 118 aa19.05■□□□□ 0.64
UPF1-207ENST00000599848 METTL15A6NJ78 407 aa19.05■□□□□ 0.64
UPF1-207ENST00000599848 DCNP07585 359 aaKnown RBP19.05■□□□□ 0.64
UPF1-207ENST00000599848 DYRK1AQ13627 763 aa19.05■□□□□ 0.64
UPF1-207ENST00000599848 ELF4Q99607 663 aaPredicted RBP19.05■□□□□ 0.64
UPF1-207ENST00000599848 ZNF395Q9H8N7 513 aaPredicted RBP19.05■□□□□ 0.64
UPF1-207ENST00000599848 UTS2O95399 124 aa19.05■□□□□ 0.64
UPF1-207ENST00000599848 STSP08842 583 aa19.05■□□□□ 0.64
UPF1-207ENST00000599848 TRA2AQ13595 282 aaKnown RBP eCLIP19.05■□□□□ 0.64
UPF1-207ENST00000599848 FAM69AQ5T7M9 428 aa19.05■□□□□ 0.64
UPF1-207ENST00000599848 KIAA1211LQ6NV74 962 aa19.05■□□□□ 0.64
UPF1-207ENST00000599848 FRMD1Q8N878 549 aa19.05■□□□□ 0.64
UPF1-207ENST00000599848 FANCGO15287 622 aa19.05■□□□□ 0.64
UPF1-207ENST00000599848 C1orf220Q5T0J3 134 aa19.05■□□□□ 0.64
UPF1-207ENST00000599848 MARCH5Q9NX47 278 aa19.05■□□□□ 0.64
UPF1-207ENST00000599848 VSX1Q9NZR4 365 aaPredicted RBP19.05■□□□□ 0.64
UPF1-207ENST00000599848 GPR39O43194 453 aa19.05■□□□□ 0.64
UPF1-207ENST00000599848 APOA2P02652 100 aa19.05■□□□□ 0.64
UPF1-207ENST00000599848 ZNF616Q08AN1 781 aa19.05■□□□□ 0.64
UPF1-207ENST00000599848 NPSR1Q6W5P4 371 aa19.05■□□□□ 0.64
UPF1-207ENST00000599848 NLRC3Q7RTR2 1065 aa19.05■□□□□ 0.64
UPF1-207ENST00000599848 CNIH3Q8TBE1 160 aa19.05■□□□□ 0.64
UPF1-207ENST00000599848 CACNG6Q9BXT2 260 aa19.05■□□□□ 0.64
UPF1-207ENST00000599848 USP22Q9UPT9 525 aa19.05■□□□□ 0.64
UPF1-207ENST00000599848 C17orf112F2Z3M2 114 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 KIAA0513O60268 411 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 TNFSF15O95150 251 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 KNG1P01042 644 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 GRB2P62993 217 aaKnown RBP19.04■□□□□ 0.64
UPF1-207ENST00000599848 KEAP1Q14145 624 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 SF3A2Q15428 464 aaKnown RBP19.04■□□□□ 0.64
UPF1-207ENST00000599848 IGFN1Q86VF2 1251 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 TREX1Q9NSU2 369 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 OR6C6A6NF89 314 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 AURKAO14965 403 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 NXPH2O95156 264 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 EPHA5P54756 1037 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 RAC1P63000 192 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 PIN1Q13526 163 aaPredicted RBP19.04■□□□□ 0.64
UPF1-207ENST00000599848 GALEQ14376 348 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 PDLIM3Q53GG5 364 aaPredicted RBP19.04■□□□□ 0.64
UPF1-207ENST00000599848 RPS26P11Q5JNZ5 115 aaPredicted RBP19.04■□□□□ 0.64
UPF1-207ENST00000599848 KHDC1LQ5JSQ8 128 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 FAM57BQ71RH2 274 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 GDPD3Q7L5L3 318 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 OR1N1Q8NGS0 311 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 MALSU1Q96EH3 234 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 ADAM12O43184 909 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 CRYAAP02489 173 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 NFYAP23511 347 aaPredicted RBP19.04■□□□□ 0.64
UPF1-207ENST00000599848 APOBEC1P41238 236 aaKnown RBP19.04■□□□□ 0.64
UPF1-207ENST00000599848 HLCSP50747 726 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 ZNF77Q15935 545 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 ZNF791Q3KP31 576 aaPredicted RBP19.04■□□□□ 0.64
UPF1-207ENST00000599848 FRMPD2BQ6IN97 320 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 GDPD1Q8N9F7 314 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 UBTD2Q8WUN7 234 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 TXN2Q99757 166 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 SH2D7A6NKC9 451 aaPredicted RBP19.04■□□□□ 0.64
UPF1-207ENST00000599848 DNASE1P24855 282 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 RAB4BP61018 213 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 RAB11AP62491 216 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 PROX2Q3B8N5 592 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 CD300LGQ6UXG3 332 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 TAAR9Q96RI9 348 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 BARHL1Q9BZE3 327 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 USP36Q9P275 1121 aaKnown RBP19.04■□□□□ 0.64
UPF1-207ENST00000599848 TGM6O95932 706 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 MAGEA6P43360 314 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 OR1D5P58170 312 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 VASNQ6EMK4 673 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 OR2A2Q6IF42 318 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 MEPCEQ7L2J0 689 aaKnown RBP19.04■□□□□ 0.64
UPF1-207ENST00000599848 ST6GALNAC5Q9BVH7 336 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 RTL8AQ9BWD3 113 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 ARMC1Q9NVT9 282 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 NDUFAF4Q9P032 175 aa19.04■□□□□ 0.64
UPF1-207ENST00000599848 KAT6AQ92794 2004 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 H7C2Y5 167 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 TRHRP34981 398 aaPredicted RBP19.03■□□□□ 0.64
UPF1-207ENST00000599848 PTH2RP49190 550 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 HES1Q14469 280 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 PGGHGQ32M88 737 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 PGAP1Q75T13 922 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 WDR5BQ86VZ2 330 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 TAS2R3Q9NYW6 316 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 LRFN1Q9P244 771 aa19.03■□□□□ 0.64
UPF1-207ENST00000599848 UBQLN2Q9UHD9 624 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms