RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 ABLIM2Q6H8Q1 611 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 OR2A2Q6IF42 318 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 P4HA3Q7Z4N8 544 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 CADM2Q8N3J6 435 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 OR2T12Q8NG77 320 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 OR6T1Q8NGN1 323 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 ABHD3Q8WU67 409 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 TESQ9UGI8 421 aaKnown RBP17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 TAGLN3Q9UI15 199 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 HDGFL3Q9Y3E1 203 aa17.41■□□□□ 0.38
SHKBP1-221ENST00000599833 IGHV3-15A0A0B4J1V0 119 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 ELOVL7A1L3X0 281 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 PMS2P2O95744 297 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 FESP07332 822 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 T-ENOLP0DO92 83 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 FCGR2AP12318 317 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 UQCRBP14927 111 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 CCNA2P20248 432 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 SLC7A1P30825 629 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 ASCL1P50553 236 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 MAP2K6P52564 334 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 BNIP2Q12982 314 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 KRT72Q14CN4 511 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 FXNQ16595 210 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 PDSS1Q5T2R2 415 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 FAM214BQ7L5A3 538 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 DNAJA3Q96EY1 480 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 GMPPAQ96IJ6 420 aaPredicted RBP17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 PSD2Q9BQI7 771 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 PCDHAC1Q9H158 963 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 ALG2Q9H553 416 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 CHST11Q9NPF2 352 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 MCTS1Q9ULC4 181 aaKnown RBP17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 CLEC4AQ9UMR7 237 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 AP3M1Q9Y2T2 418 aa17.4■□□□□ 0.38
SHKBP1-221ENST00000599833 IGKV1D-42A0A075B6H8 117 aa17.39■□□□□ 0.37
SHKBP1-221ENST00000599833 A0A0B4J2E0 115 aa17.39■□□□□ 0.37
SHKBP1-221ENST00000599833 A0A1B0GX12 115 aa17.39■□□□□ 0.37
SHKBP1-221ENST00000599833 CYTIPO60759 359 aa17.39■□□□□ 0.37
SHKBP1-221ENST00000599833 RAMP1O60894 148 aa17.39■□□□□ 0.37
SHKBP1-221ENST00000599833 FKBP2P26885 142 aaKnown RBP17.39■□□□□ 0.37
SHKBP1-221ENST00000599833 KDELR2P33947 212 aa17.39■□□□□ 0.37
SHKBP1-221ENST00000599833 CPOXP36551 454 aa17.39■□□□□ 0.37
SHKBP1-221ENST00000599833 ZNF474Q6S9Z5 364 aaPredicted RBP17.39■□□□□ 0.37
SHKBP1-221ENST00000599833 FCRLAQ7L513 359 aa17.39■□□□□ 0.37
SHKBP1-221ENST00000599833 CCDC197Q8NCU1 140 aa17.39■□□□□ 0.37
SHKBP1-221ENST00000599833 SPOCK3Q9BQ16 436 aa17.39■□□□□ 0.37
SHKBP1-221ENST00000599833 PTDSS2Q9BVG9 487 aa17.39■□□□□ 0.37
SHKBP1-221ENST00000599833 EVA1AQ9H8M9 152 aa17.39■□□□□ 0.37
SHKBP1-221ENST00000599833 C12orf10Q9HB07 376 aa17.39■□□□□ 0.37
SHKBP1-221ENST00000599833 CACYBPQ9HB71 228 aaKnown RBP17.39■□□□□ 0.37
SHKBP1-221ENST00000599833 TRAPPC4Q9Y296 219 aa17.39■□□□□ 0.37
SHKBP1-221ENST00000599833 SPIN1Q9Y657 262 aaPredicted RBP17.39■□□□□ 0.37
SHKBP1-221ENST00000599833 ZNF716A6NP11 495 aa17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 A8MXE2 369 aa17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 FTCDNL1E5RQL4 147 aa17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 FMO6PO60774 539 aa17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 SYNGR4O95473 234 aa17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 AGTR1P30556 359 aa17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 P2RY4P51582 365 aa17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 RGS8P57771 180 aaPredicted RBP17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 COPZ1P61923 177 aa17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 SIRPAP78324 504 aa17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 OR1Q1Q15612 314 aa17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 LINC00114Q6XXX2 140 aa17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 DMRTC2Q8IXT2 367 aaPredicted RBP17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 OR52E4Q8NGH9 312 aa17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 ZNF559Q9BR84 538 aa17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 POTEKPQ9BYX7 375 aa17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 TRIM2Q9C040 744 aa17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 PIGMQ9H3S5 423 aa17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 BCO1Q9HAY6 547 aa17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 CD300AQ9UGN4 299 aa17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 PACSIN3Q9UKS6 424 aa17.38■□□□□ 0.37
SHKBP1-221ENST00000599833 PDZD2O15018 2839 aa17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 LIPT2A6NK58 231 aa17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 SULT2B1O00204 365 aa17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 DNPH1O43598 174 aa17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 TFPIP10646 304 aa17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 CD8BP10966 210 aa17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 TNFRSF1BP20333 461 aa17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 NTF4P34130 210 aa17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 SLC25A3Q00325 362 aa17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 WDR88Q6ZMY6 472 aa17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 ZNF295-AS1Q8N0V1 137 aa17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 RNASE6Q93091 150 aaKnown RBP17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 SLC38A4Q969I6 547 aa17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 DDIT4LQ96D03 193 aa17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 OPN3Q9H1Y3 402 aaPredicted RBP17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 GP6Q9HCN6 339 aa17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 SPAG4Q9NPE6 437 aa17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 TIGARQ9NQ88 270 aa17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 PLSCR4Q9NRQ2 329 aa17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 GLRX2Q9NS18 164 aa17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 KLHL13Q9P2N7 655 aa17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 CACNA1DQ01668 2161 aa17.37■□□□□ 0.37
SHKBP1-221ENST00000599833 A8MVM7 634 aa17.36■□□□□ 0.37
SHKBP1-221ENST00000599833 MSTNO14793 375 aa17.36■□□□□ 0.37
SHKBP1-221ENST00000599833 PRF1P14222 555 aa17.36■□□□□ 0.37
SHKBP1-221ENST00000599833 CXCR1P25024 350 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms