RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 ZNF433Q8N7K0 673 aaPredicted RBP8.65□□□□□ -1.02
VRK3-216ENST00000599342 OR52N5Q8NH56 324 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 MGARPQ8TDB4 240 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 CNOT9Q92600 299 aaKnown RBP8.65□□□□□ -1.02
VRK3-216ENST00000599342 PMM1Q92871 262 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 RADILQ96JH8 1075 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 HS6ST2Q96MM7 605 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 NAA11Q9BSU3 229 aaPredicted RBP8.65□□□□□ -1.02
VRK3-216ENST00000599342 INPP5KQ9BT40 448 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 SLC38A1Q9H2H9 487 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 WDR55Q9H6Y2 383 aaPredicted RBP8.65□□□□□ -1.02
VRK3-216ENST00000599342 MTHFD2LQ9H903 347 aaPredicted RBP8.65□□□□□ -1.02
VRK3-216ENST00000599342 CACYBPQ9HB71 228 aaKnown RBP8.65□□□□□ -1.02
VRK3-216ENST00000599342 TAS2R16Q9NYV7 291 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 P2RX2Q9UBL9 471 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 POU2F3Q9UKI9 436 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 RAB21Q9UL25 225 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 MGAT4BQ9UQ53 548 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 TRAPPC4Q9Y296 219 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 SLC9A8Q9Y2E8 581 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 TMED7Q9Y3B3 224 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 ACANP16112 2415 aa8.65□□□□□ -1.02
VRK3-216ENST00000599342 SETD2Q9BYW2 2564 aaPredicted RBP8.65□□□□□ -1.03
VRK3-216ENST00000599342 FLNAP21333 2647 aaKnown RBP8.64□□□□□ -1.03
VRK3-216ENST00000599342 TMEM72A0PK05 275 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 TMEM247A6NEH6 219 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 SHISA9B4DS77 424 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 RNF223E7ERA6 249 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 ZNF208O43345 1280 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 RAMP1O60894 148 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 ADAM11O75078 769 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 C1QCP02747 245 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 IL6P05231 212 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 IDO1P14902 403 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 RPS4Y1P22090 263 aaKnown RBP8.64□□□□□ -1.03
VRK3-216ENST00000599342 PTAFRP25105 342 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 TACR3P29371 465 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 IL12AP29459 219 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 SLC1A3P43003 542 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 MAP2K6P52564 334 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 SLC16A1P53985 500 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 CRISP3P54108 245 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 PLAURQ03405 335 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 LIN52Q52LA3 116 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 PDCD4Q53EL6 469 aaKnown RBP8.64□□□□□ -1.03
VRK3-216ENST00000599342 COX20Q5RI15 118 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 AGAP6Q5VW22 663 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 OR7E24Q6IFN5 339 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 SLC22A25Q6T423 547 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 DNAJC14Q6Y2X3 702 aaPredicted RBP8.64□□□□□ -1.03
VRK3-216ENST00000599342 CCDC103Q8IW40 242 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 ZNF440Q8IYI8 595 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 DEPDC4Q8N2C3 294 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 TRAF4Q9BUZ4 470 aaPredicted RBP8.64□□□□□ -1.03
VRK3-216ENST00000599342 RMND5AQ9H871 391 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 BARX1Q9HBU1 254 aaPredicted RBP8.64□□□□□ -1.03
VRK3-216ENST00000599342 PARPBPQ9NWS1 579 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 NKIRAS1Q9NYS0 192 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 NPAP1Q9NZP6 1156 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 CALML5Q9NZT1 146 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 UPB1Q9UBR1 384 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 MALT1Q9UDY8 824 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 OSGIN1Q9UJX0 560 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 GPR45Q9Y5Y3 372 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 ARID1AO14497 2285 aa8.64□□□□□ -1.03
VRK3-216ENST00000599342 A0A1W2PR80 420 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 M0R1B8 84 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 FAAHO00519 579 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 ZNF500O60304 480 aaPredicted RBP8.63□□□□□ -1.03
VRK3-216ENST00000599342 SNNO75324 88 aaPredicted RBP8.63□□□□□ -1.03
VRK3-216ENST00000599342 SLC22A3O75751 556 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 TP53P04637 393 aaPredicted RBP8.63□□□□□ -1.03
VRK3-216ENST00000599342 BCHEP06276 602 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 GPIP06744 558 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 CXCR1P25024 350 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 ACVR1BP36896 505 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 CRATP43155 626 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 ZNF83P51522 516 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 WDR4P57081 412 aaKnown RBP8.63□□□□□ -1.03
VRK3-216ENST00000599342 COPZ1P61923 177 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 H3F3AP84243 136 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 DMTNQ08495 405 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 EPS8Q12929 822 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 NRF1Q16656 503 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 GSTA3Q16772 222 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 OTUD3Q5T2D3 398 aaPredicted RBP8.63□□□□□ -1.03
VRK3-216ENST00000599342 PAQR6Q6TCH4 344 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 DTX2Q86UW9 622 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 OR52E4Q8NGH9 312 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 ADAD1Q96M93 576 aaKnown RBP8.63□□□□□ -1.03
VRK3-216ENST00000599342 REG4Q9BYZ8 158 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 SLCO5A1Q9H2Y9 848 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 ARMC7Q9H6L4 198 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 THUMPD1Q9NXG2 353 aaKnown RBP8.63□□□□□ -1.03
VRK3-216ENST00000599342 FLVCR1Q9Y5Y0 555 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 SLC25A15Q9Y619 301 aa8.63□□□□□ -1.03
VRK3-216ENST00000599342 ZC3H12DA2A288 527 aaKnown RBP8.62□□□□□ -1.03
VRK3-216ENST00000599342 IGHV4-39P01824 125 aa8.62□□□□□ -1.03
VRK3-216ENST00000599342 ITGA5P08648 1049 aa8.62□□□□□ -1.03
VRK3-216ENST00000599342 GKN3PP0CG01 181 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms