RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, human

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-206	ENST00000598471	C10orf53	Q8N6V4	93 aa		13.99	□□□□□ -0.17
UPF1-206	ENST00000598471	OR14L1P	Q8NHC6	308 aa		13.99	□□□□□ -0.17
UPF1-206	ENST00000598471	SLC25A43	Q8WUT9	341 aa	Predicted RBP	13.99	□□□□□ -0.17
UPF1-206	ENST00000598471	CYGB	Q8WWM9	190 aa		13.99	□□□□□ -0.17
UPF1-206	ENST00000598471	ZNF524	Q96C55	264 aa		13.99	□□□□□ -0.17
UPF1-206	ENST00000598471	GABARAPL3	Q9BY60	117 aa		13.99	□□□□□ -0.17
UPF1-206	ENST00000598471	MEPE	Q9NQ76	525 aa	Predicted RBP	13.99	□□□□□ -0.17
UPF1-206	ENST00000598471	AP4B1	Q9Y6B7	739 aa		13.99	□□□□□ -0.17
UPF1-206	ENST00000598471	ACACA	Q13085	2346 aa		13.99	□□□□□ -0.17
UPF1-206	ENST00000598471	DMXL2	Q8TDJ6	3036 aa		13.99	□□□□□ -0.17
UPF1-206	ENST00000598471	PINLYP	A6NC86	204 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	UNC119B	A6NIH7	251 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471		H0YAE9	185 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	ACADS	P16219	412 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	TCEA1	P23193	301 aa	Known RBP	13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	SLC9A3	P48764	834 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	LSM11	P83369	360 aa	Known RBP eCLIP	13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	NPRL3	Q12980	569 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	NHSL2	Q5HYW2	709 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	RPL13AP3	Q6NVV1	102 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	RASSF6	Q6ZTQ3	369 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	SLC22A16	Q86VW1	577 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	P3H2	Q8IVL5	708 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	ZFP62	Q8NB50	900 aa	Predicted RBP	13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	POC1B	Q8TC44	478 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	SNRNP27	Q8WVK2	155 aa	Known RBP	13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	MBOAT4	Q96T53	435 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	TTTY12	Q9BZ98	90 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	OR2B2	Q9GZK3	357 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	NDEL1	Q9GZM8	345 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	UBQLN3	Q9H347	655 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	ZNF703	Q9H7S9	590 aa	Predicted RBP	13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	C20orf141	Q9NUB4	165 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	QPCTL	Q9NXS2	382 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	LRRC42	Q9Y546	428 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	CELSR3	Q9NYQ7	3312 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471	IGF2R	P11717	2491 aa		13.98	□□□□□ -0.17
UPF1-206	ENST00000598471		H3BN98	237 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	LINC01387	J3KSC0	135 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	DLGAP1	O14490	977 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	KLF4	O43474	513 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	OR2T1	O43869	369 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	HCN1	O60741	890 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	TRAPPC6A	O75865	159 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	OR7A10	O76100	309 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	RCBTB2	O95199	551 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	MT-ATP6	P00846	226 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	TFPI	P10646	304 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	MAK	P20794	623 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	CLK1	P49759	484 aa	Known RBP	13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	RPS6KA3	P51812	740 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	TPD52	P55327	224 aa	Predicted RBP	13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	MFSD13A	Q14CX5	517 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	HYAL4	Q2M3T9	481 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	C6orf52	Q5T4I8	152 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	C1orf140	Q5VVS0	124 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	CLDN22	Q8N7P3	220 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	OR6S1	Q8NH40	331 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	TEX47	Q8TBZ9	253 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	POTEKP	Q9BYX7	375 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	FAM118A	Q9NWS6	357 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	RPH3A	Q9Y2J0	694 aa	Predicted RBP	13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	ZNF337	Q9Y3M9	751 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	CDH10	Q9Y6N8	788 aa		13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	MAP1B	P46821	2468 aa	Known RBP	13.97	□□□□□ -0.17
UPF1-206	ENST00000598471	OR2M5	A3KFT3	312 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	GJE1	A6NN92	205 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	SHISA8	B8ZZ34	492 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	BCKDK	O14874	412 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	ZIC3	O60481	467 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	NPIPB7	O75200	414 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	GLS	O94925	669 aa	Predicted RBP	13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	CH25H	O95992	272 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	HIST1H2AB	P04908	130 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	RFPL3S	P0C7P2	107 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	POU1F1	P28069	291 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	GTF2E2	P29084	291 aa	Known RBP	13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	IDUA	P35475	653 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	CRISP1	P54107	249 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	NUP107	P57740	925 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	PPIA	P62937	165 aa	Known RBP	13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	ADARB1	P78563	741 aa	Known RBP	13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	EGR4	Q05215	589 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	ZNF169	Q14929	603 aa	Predicted RBP	13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	ZNF74	Q16587	644 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	TMEM44	Q2T9K0	475 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	SLC36A3	Q495N2	470 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	SYT14P1	Q58G82	188 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	FAM69A	Q5T7M9	428 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	ZNF620	Q6ZNG0	422 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	HIST3H2A	Q7L7L0	130 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	OAF	Q86UD1	273 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	MEX3D	Q86XN8	651 aa	Known RBP	13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	SLC43A2	Q8N370	569 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	FAM83F	Q8NEG4	500 aa	Predicted RBP	13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	ATP6V1C2	Q8NEY4	427 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	OR52L1	Q8NGH7	329 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	FANK1	Q8TC84	345 aa		13.96	□□□□□ -0.17
UPF1-206	ENST00000598471	TFAP2C	Q92754	450 aa		13.96	□□□□□ -0.17

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