RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 WDFY3Q8IZQ1 3526 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 SPTBN2O15020 2390 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 TMEM72A0PK05 275 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 DLGAP1O14490 977 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 KLF4O43474 513 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 ZIC3O60481 467 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 OR7A10O76100 309 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 CH25HO95992 272 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 TFPIP10646 304 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 POU1F1P28069 291 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 GPR4P46093 362 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 MEOX1P50221 254 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 FOXO1Q12778 655 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 SELENBP1Q13228 472 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 TBR1Q16650 682 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 HYAL4Q2M3T9 481 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 C1orf140Q5VVS0 124 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 RAET1LQ5VY80 246 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 ANKRD34AQ69YU3 496 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 C3orf33Q6P1S2 294 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 SETD9Q8NE22 299 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 TEX47Q8TBZ9 253 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 SNRNP27Q8WVK2 155 aaKnown RBP13.8□□□□□ -0.2
TRIM28-209ENST00000597423 LIPHQ8WWY8 451 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 TAPBPLQ9BX59 468 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 PRRG3Q9BZD7 231 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 GRIP2Q9C0E4 1043 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 NANSQ9NR45 359 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 GMPPBQ9Y5P6 360 aa13.8□□□□□ -0.2
TRIM28-209ENST00000597423 IGKV1D-42A0A075B6H8 117 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 A0A0G2JMM0 328 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 A0A1W2PPB8 328 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 A0A1W2PRS3 328 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 ENO4A6NNW6 628 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 KIR3DP1A8MWS1 328 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 PIP5K1CO60331 668 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 MAKP20794 623 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 PPIAP62937 165 aaKnown RBP13.79□□□□□ -0.2
TRIM28-209ENST00000597423 ADARB1P78563 741 aaKnown RBP13.79□□□□□ -0.2
TRIM28-209ENST00000597423 KEAP1Q14145 624 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 TMEM44Q2T9K0 475 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 ZBED5Q49AG3 693 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 CMPK2Q5EBM0 449 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 MAMDC2Q7Z304 686 aaPredicted RBP13.79□□□□□ -0.2
TRIM28-209ENST00000597423 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.79□□□□□ -0.2
TRIM28-209ENST00000597423 P3H2Q8IVL5 708 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 DEPDC4Q8N2C3 294 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 ZFP62Q8NB50 900 aaPredicted RBP13.79□□□□□ -0.2
TRIM28-209ENST00000597423 ATP6V1C2Q8NEY4 427 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 OR52L1Q8NGH7 329 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 POC1BQ8TC44 478 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 ZCCHC14Q8WYQ9 949 aaKnown RBP13.79□□□□□ -0.2
TRIM28-209ENST00000597423 ZNF524Q96C55 264 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 MBOAT4Q96T53 435 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 KLHDC3Q9BQ90 382 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 ASPNQ9BXN1 380 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 OR2B2Q9GZK3 357 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 FKRPQ9H9S5 495 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 C20orf141Q9NUB4 165 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 REV1Q9UBZ9 1251 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 ZNF229Q9UJW7 825 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 RPH3AQ9Y2J0 694 aaPredicted RBP13.79□□□□□ -0.2
TRIM28-209ENST00000597423 LRCH1Q9Y2L9 728 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 HDGFL3Q9Y3E1 203 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 CDH10Q9Y6N8 788 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 HSPE1-MOB4S4R3N1 261 aa13.79□□□□□ -0.2
TRIM28-209ENST00000597423 LRRC3CA6NJW4 275 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 C1QTNF9BB2RNN3 333 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 BCKDKO14874 412 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 GLSO94925 669 aaPredicted RBP13.78□□□□□ -0.2
TRIM28-209ENST00000597423 OR6A2O95222 327 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 HPNP05981 417 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 C1QTNF9P0C862 333 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 CHMP24386 653 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 GTF2E2P29084 291 aaKnown RBP13.78□□□□□ -0.2
TRIM28-209ENST00000597423 IDUAP35475 653 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 SMSP52788 366 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 PRPS1P60891 318 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 CDC42P60953 191 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 RAC1P63000 192 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 CXADRP78310 365 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 LSM11P83369 360 aaKnown RBP eCLIP13.78□□□□□ -0.2
TRIM28-209ENST00000597423 SLC10A1Q14973 349 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 PTGES3Q15185 160 aaKnown RBP13.78□□□□□ -0.2
TRIM28-209ENST00000597423 ZNF74Q16587 644 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 FAM69AQ5T7M9 428 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 KRT80Q6KB66 452 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 SMARCD3Q6STE5 483 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 C8orf59Q8N0T1 100 aaPredicted RBP13.78□□□□□ -0.2
TRIM28-209ENST00000597423 FAM83FQ8NEG4 500 aaPredicted RBP13.78□□□□□ -0.2
TRIM28-209ENST00000597423 MFSD8Q8NHS3 518 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 KTI12Q96EK9 354 aaPredicted RBP13.78□□□□□ -0.2
TRIM28-209ENST00000597423 HRASLS5Q96KN8 279 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 SFXN2Q96NB2 322 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 GPA33Q99795 319 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 HES7Q9BYE0 225 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 ANKRD60Q9BZ19 345 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 TTTY12Q9BZ98 90 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 UBQLN3Q9H347 655 aa13.78□□□□□ -0.2
TRIM28-209ENST00000597423 IL20Q9NYY1 176 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms