RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 RANBP3LQ86VV4 465 aaPredicted RBP13.43□□□□□ -0.26
UPF1-202ENST00000594243 KIF18BQ86Y91 864 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 DMRTC2Q8IXT2 367 aaPredicted RBP13.43□□□□□ -0.26
UPF1-202ENST00000594243 SLC15A3Q8IY34 581 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 OR2T12Q8NG77 320 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 OR52E4Q8NGH9 312 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 OR6K3Q8NGY3 331 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 ARL5BQ96KC2 179 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 ZNF559Q9BR84 538 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 TACO1Q9BSH4 297 aaKnown RBP13.43□□□□□ -0.26
UPF1-202ENST00000594243 RBM24Q9BX46 236 aaKnown RBP13.43□□□□□ -0.26
UPF1-202ENST00000594243 POTEKPQ9BYX7 375 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 TRIM2Q9C040 744 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 C12orf10Q9HB07 376 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 TMEM27Q9HBJ8 222 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 PLSCR4Q9NRQ2 329 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 TESQ9UGI8 421 aaKnown RBP13.43□□□□□ -0.26
UPF1-202ENST00000594243 PROCRQ9UNN8 238 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 ITPR2Q14571 2701 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 DIDO1Q9BTC0 2240 aaKnown RBP13.43□□□□□ -0.26
UPF1-202ENST00000594243 DOPEY1Q5JWR5 2465 aa13.42□□□□□ -0.26
UPF1-202ENST00000594243 A8MVM7 634 aa13.42□□□□□ -0.26
UPF1-202ENST00000594243 EIF1BO60739 113 aaKnown RBP13.42□□□□□ -0.26
UPF1-202ENST00000594243 OPN1SWP03999 348 aa13.42□□□□□ -0.26
UPF1-202ENST00000594243 HOXC5Q00444 222 aa13.42□□□□□ -0.26
UPF1-202ENST00000594243 C8orf82Q6P1X6 216 aaPredicted RBP13.42□□□□□ -0.26
UPF1-202ENST00000594243 DNAJA4Q8WW22 397 aaPredicted RBP13.42□□□□□ -0.26
UPF1-202ENST00000594243 C3orf49Q96BT1 292 aa13.42□□□□□ -0.26
UPF1-202ENST00000594243 OR11A1Q9GZK7 315 aa13.42□□□□□ -0.26
UPF1-202ENST00000594243 CMTM6Q9NX76 183 aa13.42□□□□□ -0.26
UPF1-202ENST00000594243 SELENONQ9NZV5 590 aa13.42□□□□□ -0.26
UPF1-202ENST00000594243 KLHL9Q9P2J3 617 aa13.42□□□□□ -0.26
UPF1-202ENST00000594243 CLEC4AQ9UMR7 237 aa13.42□□□□□ -0.26
UPF1-202ENST00000594243 HEATR5AQ86XA9 2040 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 IGHV3-15A0A0B4J1V0 119 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 ELOA3DA6NLF2 546 aaPredicted RBP13.41□□□□□ -0.26
UPF1-202ENST00000594243 CCT8L1PA6NM43 557 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 CYTIPO60759 359 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 SHOX2O60902 331 aaPredicted RBP13.41□□□□□ -0.26
UPF1-202ENST00000594243 CGAP01215 116 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 FESP07332 822 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 YES1P07947 543 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 PNMTP11086 282 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 OR2B6P58173 313 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 SLC35A1P78382 337 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 LIPEQ05469 1076 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 RASGEF1BQ0VAM2 473 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 ELOA3BQ3SY89 546 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 FAM91A1Q658Y4 838 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 ULK3Q6PHR2 472 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 ATG4DQ86TL0 474 aaPredicted RBP13.41□□□□□ -0.26
UPF1-202ENST00000594243 COMTD1Q86VU5 262 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 MICU2Q8IYU8 434 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 ELOA3Q8NG57 546 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 STK35Q8TDR2 534 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 ABHD3Q8WU67 409 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 TAMM41Q96BW9 452 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 SLC47A1Q96FL8 570 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 ARHGDIGQ99819 225 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 NAA11Q9BSU3 229 aaPredicted RBP13.41□□□□□ -0.26
UPF1-202ENST00000594243 ELOVL5Q9NYP7 299 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 KLHL13Q9P2N7 655 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 BAG5Q9UL15 447 aa13.41□□□□□ -0.26
UPF1-202ENST00000594243 MED12Q93074 2177 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 SMAD9O15198 467 aaKnown RBP13.4□□□□□ -0.26
UPF1-202ENST00000594243 FMO6PO60774 539 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 GPIP06744 558 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 IMPDH2P12268 514 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 CD247P20963 164 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 AGTR1P30556 359 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 KDELR2P33947 212 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 IDUAP35475 653 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 PCYT1AP49585 367 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 SLC7A2P52569 658 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 PSME3P61289 254 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 SORDQ00796 357 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 BNIP2Q12982 314 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 PDK3Q15120 406 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 OR1Q1Q15612 314 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 NRF1Q16656 503 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 ALG10BQ5I7T1 473 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 C5orf46Q6UWT4 87 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 C6orf89Q6UWU4 347 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 STK32CQ86UX6 486 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 TUSC5Q8IXB3 177 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 ZNF610Q8N9Z0 462 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 CCDC197Q8NCU1 140 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 GPR32P1Q8NGA4 272 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 PROX1Q92786 737 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 MCHR1Q99705 422 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 PSD2Q9BQI7 771 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 TAPBPLQ9BX59 468 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 OPN3Q9H1Y3 402 aaPredicted RBP13.4□□□□□ -0.26
UPF1-202ENST00000594243 ALG2Q9H553 416 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 BCO1Q9HAY6 547 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 FANCFQ9NPI8 374 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 GALNT8Q9NY28 637 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 KCNN3Q9UGI6 736 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 TAGLN3Q9UI15 199 aa13.4□□□□□ -0.26
UPF1-202ENST00000594243 USP22Q9UPT9 525 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms