RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	SEC24A	O95486	1093 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	IGF1	P05019	195 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	RPS17	P08708	135 aa	Known RBP	4.2	□□□□□ -1.74
SS18-223	ENST00000583595	SNHG28	P0DPA3	235 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	FGF3	P11487	239 aa	Predicted RBP	4.2	□□□□□ -1.74
SS18-223	ENST00000583595	NAMPT	P43490	491 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	PLTP	P55058	493 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	PEX3	P56589	373 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	YWHAG	P61981	247 aa	Known RBP eCLIP	4.2	□□□□□ -1.74
SS18-223	ENST00000583595	ENPEP	Q07075	957 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	CDC20	Q12834	499 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	ZP4	Q12836	540 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	SLC17A1	Q14916	467 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	TWIST1	Q15672	202 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	SSX2	Q16385	188 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	DPYSL2	Q16555	572 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	TMEM52B	Q4KMG9	183 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	PPM1L	Q5SGD2	360 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	C1orf146	Q5VVC0	180 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595		Q6ZPB1	254 aa	Predicted RBP	4.2	□□□□□ -1.74
SS18-223	ENST00000583595	LINC00299	Q6ZSB3	139 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	LANCL3	Q6ZV70	420 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	HDDC2	Q7Z4H3	204 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	ACOT1	Q86TX2	421 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	OR4N5	Q8IXE1	308 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	SYCE1	Q8N0S2	351 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	CLEC4F	Q8N1N0	589 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	SYT14	Q8NB59	555 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	CHDH	Q8NE62	594 aa	Predicted RBP	4.2	□□□□□ -1.74
SS18-223	ENST00000583595	NEUROG1	Q92886	237 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	SGK3	Q96BR1	496 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	UPRT	Q96BW1	309 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	C12orf43	Q96C57	262 aa	Known RBP	4.2	□□□□□ -1.74
SS18-223	ENST00000583595	ISOC1	Q96CN7	298 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	PELI1	Q96FA3	418 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	DCUN1D1	Q96GG9	259 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	ELMO2	Q96JJ3	720 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	OPALIN	Q96PE5	141 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	CYTH2	Q99418	400 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	POLE4	Q9NR33	117 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	SMOX	Q9NWM0	555 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	ERRFI1	Q9UJM3	462 aa	Predicted RBP	4.2	□□□□□ -1.74
SS18-223	ENST00000583595	TCF19	Q9Y242	345 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	EIF3L	Q9Y262	564 aa	Known RBP	4.2	□□□□□ -1.74
SS18-223	ENST00000583595	MEMO1	Q9Y316	297 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	KIF1B	O60333	1816 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	TNS3	Q68CZ2	1445 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	STK36	Q9NRP7	1315 aa		4.2	□□□□□ -1.74
SS18-223	ENST00000583595	CD163L1	Q9NR16	1453 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	FRMPD3	Q5JV73	1810 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595		A0A087WXM4	84 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	HEATR9	A2RTY3	570 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	BTBD17	A6NE02	478 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	MSGN1	A6NI15	193 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	NKX6-3	A6NJ46	265 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595		A8MX80	341 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595		E7EWF7	191 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	NEDD8-MDP1	E9PL57	170 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	ATP6V1G2-DDX39B	F2Z307	99 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	BTN3A3	O00478	584 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	EI24	O14681	340 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	DFNA5	O60443	496 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	CIDEA	O60543	219 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	TOX	O94900	526 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	IGSF6	O95976	241 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	TOMM40	O96008	361 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	ASS1	P00966	412 aa	Known RBP	4.19	□□□□□ -1.74
SS18-223	ENST00000583595	IFNA14	P01570	189 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	IFNA16	P05015	189 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	RET	P07949	1114 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	FH	P07954	510 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	POLR2M	P0CAP2	368 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	STAG3L3	P0CL85	134 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	DAO	P14920	347 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	ZNF3	P17036	446 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	PSMC3	P17980	439 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	SERPINB1	P30740	379 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	DCT	P40126	519 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	LINC00205	P59089	165 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	KRTAP10-9	P60411	292 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	OSTN	P61366	133 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	VBP1	P61758	197 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	EWSR1	Q01844	656 aa	Known RBP eCLIP	4.19	□□□□□ -1.74
SS18-223	ENST00000583595	ZNF33B	Q06732	778 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	CD300C	Q08708	224 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	RBBP4	Q09028	425 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	CALCOCO2	Q13137	446 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	CDK10	Q15131	360 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595		Q3ZCU0	254 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	WDR38	Q5JTN6	314 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	CELF3	Q5SZQ8	465 aa	Known RBP	4.19	□□□□□ -1.74
SS18-223	ENST00000583595	DDI2	Q5TDH0	399 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	C1orf189	Q5VU69	101 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	CARD17	Q5XLA6	110 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	LPCAT4	Q643R3	524 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	PPP1R2P3	Q6NXS1	205 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	CREB3L2	Q70SY1	520 aa		4.19	□□□□□ -1.74
SS18-223	ENST00000583595	ZNF589	Q86UQ0	364 aa	Predicted RBP	4.19	□□□□□ -1.74
SS18-223	ENST00000583595	RANBP3L	Q86VV4	465 aa	Predicted RBP	4.19	□□□□□ -1.74
SS18-223	ENST00000583595	SPATA2L	Q8IUW3	424 aa	Predicted RBP	4.19	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 43 ms