RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 PLEKHA6Q9Y2H5 1048 aa21.23■□□□□ 0.99
SHMT1-206ENST00000579558 GPR52Q9Y2T5 361 aa21.23■□□□□ 0.99
SHMT1-206ENST00000579558 AKAP9Q99996 3911 aa21.23■□□□□ 0.99
SHMT1-206ENST00000579558 DEFB108AA8MXU0 73 aa21.22■□□□□ 0.99
SHMT1-206ENST00000579558 SIAH2O43255 324 aa21.22■□□□□ 0.99
SHMT1-206ENST00000579558 PSMB1P20618 241 aaKnown RBP21.22■□□□□ 0.99
SHMT1-206ENST00000579558 DNASE1P24855 282 aa21.22■□□□□ 0.99
SHMT1-206ENST00000579558 CXCR1P25024 350 aa21.22■□□□□ 0.99
SHMT1-206ENST00000579558 ART1P52961 327 aa21.22■□□□□ 0.99
SHMT1-206ENST00000579558 SF3A3Q12874 501 aaKnown RBP eCLIP21.22■□□□□ 0.992e-6■■■■■ 32.1
SHMT1-206ENST00000579558 SCARB2Q14108 478 aa21.22■□□□□ 0.99
SHMT1-206ENST00000579558 TESK1Q15569 626 aa21.22■□□□□ 0.99
SHMT1-206ENST00000579558 PAMR1Q6UXH9 720 aa21.22■□□□□ 0.99
SHMT1-206ENST00000579558 C22orf34Q6ZV56 151 aa21.22■□□□□ 0.99
SHMT1-206ENST00000579558 RETREG3Q86VR2 466 aa21.22■□□□□ 0.99
SHMT1-206ENST00000579558 CXorf67Q86X51 503 aaPredicted RBP21.22■□□□□ 0.99
SHMT1-206ENST00000579558 KRT73Q86Y46 540 aa21.22■□□□□ 0.99
SHMT1-206ENST00000579558 GABRG1Q8N1C3 465 aa21.22■□□□□ 0.99
SHMT1-206ENST00000579558 DPP10Q8N608 796 aa21.22■□□□□ 0.99
SHMT1-206ENST00000579558 PIGXQ8TBF5 258 aa21.22■□□□□ 0.99
SHMT1-206ENST00000579558 PIK3IP1Q96FE7 263 aa21.22■□□□□ 0.99
SHMT1-206ENST00000579558 ACTR6Q9GZN1 396 aa21.22■□□□□ 0.99
SHMT1-206ENST00000579558 TMEM38AQ9H6F2 299 aa21.22■□□□□ 0.99
SHMT1-206ENST00000579558 CCM2LQ9NUG4 571 aaPredicted RBP21.22■□□□□ 0.99
SHMT1-206ENST00000579558 EMC3Q9P0I2 261 aa21.22■□□□□ 0.99
SHMT1-206ENST00000579558 A0A1W2PPR1 153 aa21.21■□□□□ 0.99
SHMT1-206ENST00000579558 ZC3H12DA2A288 527 aaKnown RBP21.21■□□□□ 0.99
SHMT1-206ENST00000579558 FRS3O43559 492 aa21.21■□□□□ 0.99
SHMT1-206ENST00000579558 GCM2O75603 506 aaPredicted RBP21.21■□□□□ 0.99
SHMT1-206ENST00000579558 SLC6A2P23975 617 aa21.21■□□□□ 0.99
SHMT1-206ENST00000579558 OR3A2P47893 321 aa21.21■□□□□ 0.99
SHMT1-206ENST00000579558 ARFIP2P53365 341 aa21.21■□□□□ 0.99
SHMT1-206ENST00000579558 GUCY1A3Q02108 690 aa21.21■□□□□ 0.99
SHMT1-206ENST00000579558 NFYCQ13952 458 aa21.21■□□□□ 0.99
SHMT1-206ENST00000579558 PDK3Q15120 406 aa21.21■□□□□ 0.99
SHMT1-206ENST00000579558 GALNT5Q7Z7M9 940 aa21.21■□□□□ 0.99
SHMT1-206ENST00000579558 CGREF1Q99674 301 aa21.21■□□□□ 0.99
SHMT1-206ENST00000579558 SPATA5L1Q9BVQ7 753 aa21.21■□□□□ 0.99
SHMT1-206ENST00000579558 OR10A4Q9H209 315 aa21.21■□□□□ 0.99
SHMT1-206ENST00000579558 MED4Q9NPJ6 270 aa21.21■□□□□ 0.99
SHMT1-206ENST00000579558 FREM1Q5H8C1 2179 aa21.21■□□□□ 0.99
SHMT1-206ENST00000579558 IGKV3D-15A0A087WSY6 115 aa21.2■□□□□ 0.98
SHMT1-206ENST00000579558 THBDP07204 575 aa21.2■□□□□ 0.98
SHMT1-206ENST00000579558 IMPDH2P12268 514 aa21.2■□□□□ 0.98
SHMT1-206ENST00000579558 PRKAR1BP31321 381 aa21.2■□□□□ 0.98
SHMT1-206ENST00000579558 SLC35A1P78382 337 aa21.2■□□□□ 0.98
SHMT1-206ENST00000579558 CGB2Q6NT52 195 aa21.2■□□□□ 0.98
SHMT1-206ENST00000579558 STEAP2Q8NFT2 490 aa21.2■□□□□ 0.98
SHMT1-206ENST00000579558 SLC35B4Q969S0 331 aa21.2■□□□□ 0.98
SHMT1-206ENST00000579558 ANKRD27Q96NW4 1050 aa21.2■□□□□ 0.98
SHMT1-206ENST00000579558 HDHD5Q9BXW7 423 aa21.2■□□□□ 0.98
SHMT1-206ENST00000579558 PRSS50Q9UI38 385 aa21.2■□□□□ 0.98
SHMT1-206ENST00000579558 ZNF716A6NP11 495 aa21.19■□□□□ 0.98
SHMT1-206ENST00000579558 ZNF814B7Z6K7 855 aa21.19■□□□□ 0.98
SHMT1-206ENST00000579558 EIF1BO60739 113 aaKnown RBP21.19■□□□□ 0.98
SHMT1-206ENST00000579558 ADAP00813 363 aa21.19■□□□□ 0.98
SHMT1-206ENST00000579558 RAF1P04049 648 aa21.19■□□□□ 0.98
SHMT1-206ENST00000579558 FPR1P21462 350 aa21.19■□□□□ 0.98
SHMT1-206ENST00000579558 IL32P24001 234 aa21.19■□□□□ 0.98
SHMT1-206ENST00000579558 IDUAP35475 653 aa21.19■□□□□ 0.98
SHMT1-206ENST00000579558 MTPNP58546 118 aa21.19■□□□□ 0.98
SHMT1-206ENST00000579558 HOXC5Q00444 222 aa21.19■□□□□ 0.98
SHMT1-206ENST00000579558 TSC22D1Q15714 1073 aa21.19■□□□□ 0.98
SHMT1-206ENST00000579558 ADRM1Q16186 407 aa21.19■□□□□ 0.98
SHMT1-206ENST00000579558 ZC3HAV1Q7Z2W4 902 aaKnown RBP21.19■□□□□ 0.98
SHMT1-206ENST00000579558 CCDC103Q8IW40 242 aa21.19■□□□□ 0.98
SHMT1-206ENST00000579558 ZNF100Q8IYN0 542 aa21.19■□□□□ 0.98
SHMT1-206ENST00000579558 HIPK4Q8NE63 616 aa21.19■□□□□ 0.98
SHMT1-206ENST00000579558 ZNF607Q96SK3 696 aa21.19■□□□□ 0.98
SHMT1-206ENST00000579558 NAA11Q9BSU3 229 aaPredicted RBP21.19■□□□□ 0.98
SHMT1-206ENST00000579558 POTEKPQ9BYX7 375 aa21.19■□□□□ 0.98
SHMT1-206ENST00000579558 ANGPT4Q9Y264 503 aa21.19■□□□□ 0.98
SHMT1-206ENST00000579558 RAMP1O60894 148 aa21.18■□□□□ 0.98
SHMT1-206ENST00000579558 EDNRAP25101 427 aa21.18■□□□□ 0.98
SHMT1-206ENST00000579558 AQP1P29972 269 aa21.18■□□□□ 0.98
SHMT1-206ENST00000579558 BNIP2Q12982 314 aa21.18■□□□□ 0.98
SHMT1-206ENST00000579558 KEAP1Q14145 624 aa21.18■□□□□ 0.98
SHMT1-206ENST00000579558 SELPLGQ14242 412 aa21.18■□□□□ 0.98
SHMT1-206ENST00000579558 P2RY6Q15077 328 aa21.18■□□□□ 0.98
SHMT1-206ENST00000579558 CYP51A1Q16850 503 aa21.18■□□□□ 0.98
SHMT1-206ENST00000579558 SFRP5Q5T4F7 317 aa21.18■□□□□ 0.98
SHMT1-206ENST00000579558 DHRS4L2Q6PKH6 230 aa21.18■□□□□ 0.98
SHMT1-206ENST00000579558 Q6ZT83 130 aa21.18■□□□□ 0.98
SHMT1-206ENST00000579558 WFDC8Q8IUA0 241 aa21.18■□□□□ 0.98
SHMT1-206ENST00000579558 KISS1RQ969F8 398 aaPredicted RBP21.18■□□□□ 0.98
SHMT1-206ENST00000579558 C3orf49Q96BT1 292 aa21.18■□□□□ 0.98
SHMT1-206ENST00000579558 S100PBPQ96BU1 408 aa21.18■□□□□ 0.98
SHMT1-206ENST00000579558 CCDC134Q9H6E4 229 aa21.18■□□□□ 0.98
SHMT1-206ENST00000579558 MRGBPQ9NV56 204 aa21.18■□□□□ 0.98
SHMT1-206ENST00000579558 NOSIPQ9Y314 301 aaKnown RBP21.18■□□□□ 0.98
SHMT1-206ENST00000579558 A8MVM7 634 aa21.17■□□□□ 0.98
SHMT1-206ENST00000579558 GPR171O14626 319 aa21.17■□□□□ 0.98
SHMT1-206ENST00000579558 GPIP06744 558 aa21.17■□□□□ 0.98
SHMT1-206ENST00000579558 SLC16A1P53985 500 aa21.17■□□□□ 0.98
SHMT1-206ENST00000579558 H3F3AP84243 136 aa21.17■□□□□ 0.98
SHMT1-206ENST00000579558 CEACAM7Q14002 265 aa21.17■□□□□ 0.98
SHMT1-206ENST00000579558 OR7A5Q15622 319 aa21.17■□□□□ 0.98
SHMT1-206ENST00000579558 SPNS3Q6ZMD2 512 aa21.17■□□□□ 0.98
SHMT1-206ENST00000579558 C11orf65Q8NCR3 313 aa21.17■□□□□ 0.98
SHMT1-206ENST00000579558 RSPO3Q9BXY4 272 aaPredicted RBP21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms