RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ZNF724A8MTY0 619 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 TMEM114B3SHH9 223 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 ANKRD28O15084 1053 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 CLOCKO15516 846 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 ZNF264O43296 627 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 ITM2AO43736 263 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 TYROBPO43914 113 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 EIF4E2O60573 245 aaKnown RBP5.93□□□□□ -1.46
VPS53-213ENST00000572334 LYPLA1O75608 230 aaPredicted RBP5.93□□□□□ -1.46
VPS53-213ENST00000572334 LYZL6O75951 148 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 NUDT14O95848 222 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 CHEK2O96017 543 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 CD3EP07766 207 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 UBL4AP11441 157 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 PTNP21246 168 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 IL32P24001 234 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 PGM1P36871 562 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 CASP9P55211 416 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 FOXG1P55316 489 aaPredicted RBP5.93□□□□□ -1.46
VPS53-213ENST00000572334 CLDN8P56748 225 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 MED21Q13503 144 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 P2RY6Q15077 328 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 TRMT5Q32P41 509 aaKnown RBP5.93□□□□□ -1.46
VPS53-213ENST00000572334 CNPY1Q3B7I2 92 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 ARHGAP11BQ3KRB8 267 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 DNAL1Q4LDG9 190 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 TIGD2Q4W5G0 525 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 ATP6AP1LQ52LC2 224 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 OR4F3Q6IEY1 312 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 C11orf71Q6IPW1 123 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 HEPHL1Q6MZM0 1159 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 ALKBH2Q6NS38 261 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 B3GLCTQ6Y288 498 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 C6orf120Q7Z4R8 191 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 SLC43A2Q8N370 569 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 ZNF433Q8N7K0 673 aaPredicted RBP5.93□□□□□ -1.46
VPS53-213ENST00000572334 SCAIQ8N9R8 606 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 RFWD2Q8NHY2 731 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 TCP10LQ8TDR4 215 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 KISS1RQ969F8 398 aaPredicted RBP5.93□□□□□ -1.46
VPS53-213ENST00000572334 ZG16BQ96DA0 208 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 LRGUKQ96M69 825 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 THUMPD3Q9BV44 507 aaKnown RBP5.93□□□□□ -1.46
VPS53-213ENST00000572334 DUSP26Q9BV47 211 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 POTEKPQ9BYX7 375 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 REG4Q9BYZ8 158 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 GRIP2Q9C0E4 1043 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 BHLHE41Q9C0J9 482 aaPredicted RBP5.93□□□□□ -1.46
VPS53-213ENST00000572334 C20orf27Q9GZN8 174 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 NMUR2Q9GZQ4 415 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 ZNF350Q9GZX5 532 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 LAT2Q9GZY6 243 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 ACER3Q9NUN7 267 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 ASIC5Q9NY37 505 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 MID2Q9UJV3 735 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 FAF1Q9UNN5 650 aaPredicted RBP5.93□□□□□ -1.46
VPS53-213ENST00000572334 LIPT1Q9Y234 373 aa5.93□□□□□ -1.46
VPS53-213ENST00000572334 TLDC2A0PJX2 215 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 CLDN24A6NM45 220 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 GJE1A6NN92 205 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 E7EQL1 145 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 GTPBP1O00178 669 aaKnown RBP5.92□□□□□ -1.46
VPS53-213ENST00000572334 CD5LO43866 347 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 KIAA0513O60268 411 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 GPRIN2O60269 458 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 BPGMP07738 259 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 GUSBP08236 651 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 PRPS1L1P21108 318 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 MATN1P21941 496 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 MAPK1P28482 360 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 RPL3P39023 403 aaKnown RBP5.92□□□□□ -1.46
VPS53-213ENST00000572334 DIO1P49895 249 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 PPP2R2BQ00005 443 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 EMX2Q04743 252 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 SPOCK1Q08629 439 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 RASGEF1BQ0VAM2 473 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 FAPQ12884 760 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 CBFBQ13951 182 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 VEZF1Q14119 521 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 GPR68Q15743 365 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 LSM12Q3MHD2 195 aaKnown RBP5.92□□□□□ -1.46
VPS53-213ENST00000572334 TIMM23BQ5SRD1 257 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 THOC7Q6I9Y2 204 aaKnown RBP5.92□□□□□ -1.46
VPS53-213ENST00000572334 TYW3Q6IPR3 259 aaKnown RBP5.92□□□□□ -1.46
VPS53-213ENST00000572334 C3orf33Q6P1S2 294 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 FRRS1Q6ZNA5 592 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 TMPPEQ6ZT21 453 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 ADGRG3Q86Y34 549 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 ZNF614Q8N883 585 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 FNDC5Q8NAU1 212 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 TOR1AIP2Q8NFQ8 470 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 OR8J2Q8NGG1 315 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 SPATA3Q8NHX4 192 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 ST8SIA1Q92185 356 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 MOAP1Q96BY2 351 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 ARL5BQ96KC2 179 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 OR5B2Q96R09 309 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 CCDC106Q9BWC9 280 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 SAP130Q9H0E3 1048 aa5.92□□□□□ -1.46
VPS53-213ENST00000572334 OR51I1Q9H343 314 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms