RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 DLK2Q6UY11 383 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 ABHD13Q7L211 337 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 LINGO2Q7L985 606 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 LDB1Q86U70 411 aaPredicted RBP2.99□□□□□ -1.93
VPS35-208ENST00000568612 TMEM135Q86UB9 458 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 NAA40Q86UY6 237 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 NAXDQ8IW45 347 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 WDFY1Q8IWB7 410 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 BAP18Q8IXM2 172 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 APCDD1Q8J025 514 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 PGAM4Q8N0Y7 254 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 PUSL1Q8N0Z8 303 aaKnown RBP2.99□□□□□ -1.93
VPS35-208ENST00000568612 ZFP82Q8N141 532 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 C15orf54Q8N8G6 183 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 RTL3Q8N8U3 475 aaKnown RBP2.99□□□□□ -1.93
VPS35-208ENST00000568612 HSD17B11Q8NBQ5 300 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 OR4Q3Q8NH05 313 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 OR2L2Q8NH16 312 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 PRSS3P2Q8NHM4 247 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 FIBINQ8TAL6 211 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 DUSP19Q8WTR2 217 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 SCARB1Q8WTV0 552 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 TFB1MQ8WVM0 346 aaKnown RBP2.99□□□□□ -1.93
VPS35-208ENST00000568612 LCN9Q8WX39 176 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 TMEM234Q8WY98 164 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 ACOT12Q8WYK0 555 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 KCNJ9Q92806 393 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 KAT2AQ92830 837 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 GHSRQ92847 366 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 OSTF1Q92882 214 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 CDS1Q92903 461 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 PSMG2Q969U7 264 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 MRGPRFQ96AM1 343 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 ASB9Q96DX5 294 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 CCDC126Q96EE4 140 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 SCMH1Q96GD3 660 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 WDYHV1Q96HA8 205 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 SAMD8Q96LT4 415 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 NECTIN4Q96NY8 510 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 WDFY2Q96P53 400 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 CPXM1Q96SM3 734 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 ZNF382Q96SR6 550 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 AGPAT1Q99943 283 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 HOPXQ9BPY8 73 aaPredicted RBP2.99□□□□□ -1.93
VPS35-208ENST00000568612 THUMPD3Q9BV44 507 aaKnown RBP2.99□□□□□ -1.93
VPS35-208ENST00000568612 SUCNR1Q9BXA5 334 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 C1QTNF6Q9BXI9 259 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 CHST5Q9GZS9 411 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 SLC25A32Q9H2D1 315 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 HIPK2Q9H2X6 1198 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 MUC13Q9H3R2 512 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 ACTL8Q9H568 366 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 ZNF385DQ9H6B1 395 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 TMEM38AQ9H6F2 299 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 PTGES2Q9H7Z7 377 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 NT5DC2Q9H857 520 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 ZNF430Q9H8G1 570 aaPredicted RBP2.99□□□□□ -1.93
VPS35-208ENST00000568612 CHODLQ9H9P2 273 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 ERVK-5Q9HDB9 667 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP2.99□□□□□ -1.93
VPS35-208ENST00000568612 SPHK2Q9NRA0 654 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 CENPMQ9NSP4 180 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 ZNF701Q9NV72 531 aaPredicted RBP2.99□□□□□ -1.93
VPS35-208ENST00000568612 NLE1Q9NVX2 485 aaPredicted RBP2.99□□□□□ -1.93
VPS35-208ENST00000568612 FAM118AQ9NWS6 357 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 ASIC5Q9NY37 505 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 HCN3Q9P1Z3 774 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 C5AR2Q9P296 337 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 DKK4Q9UBT3 224 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 WNT16Q9UBV4 365 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 ZNF70Q9UC06 446 aaPredicted RBP2.99□□□□□ -1.93
VPS35-208ENST00000568612 ZDHHC2Q9UIJ5 367 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 SIX4Q9UIU6 781 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 SLC25A13Q9UJS0 675 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 DKKL1Q9UK85 242 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 SLC13A4Q9UKG4 626 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 ZNF490Q9ULM2 529 aaPredicted RBP2.99□□□□□ -1.93
VPS35-208ENST00000568612 NENFQ9UMX5 172 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 SLC7A11Q9UPY5 501 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 PSG11Q9UQ72 335 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 SLC35A3Q9Y2D2 325 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 PADI2Q9Y2J8 665 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 CARHSP1Q9Y2V2 147 aaKnown RBP2.99□□□□□ -1.93
VPS35-208ENST00000568612 ADAM18Q9Y3Q7 739 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 SLCO1B1Q9Y6L6 691 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 SCN11AQ9UI33 1791 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 ARAP2Q8WZ64 1704 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 SIGLEC1Q9BZZ2 1709 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 NWD2Q9ULI1 1742 aa2.99□□□□□ -1.93
VPS35-208ENST00000568612 RREB1Q92766 1687 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 ZNF541Q9H0D2 1346 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 CD163L1Q9NR16 1453 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 CCDC187A0A096LP49 1063 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 A0A1W2PQ09 198 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 A0A1W2PRV1 198 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 TCRBV5S1A1TA0A578 114 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 TMEM72A0PK05 275 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 A8MWP6 167 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 SUPT3HB4E1H0 165 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 DISC1C4P0D8 188 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms