RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 TPST1O60507 370 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 PMS2P2O95744 297 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 IMPDH2P12268 514 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 UQCRBP14927 111 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 EDNRAP25101 427 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 MTPNP58546 118 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 RASGEF1BQ0VAM2 473 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 SCARB2Q14108 478 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 POU4F3Q15319 338 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 WBP2NLQ6ICG8 309 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 STAC2Q6ZMT1 411 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 PTOV1Q86YD1 416 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 ZNF317Q96PQ6 595 aaPredicted RBP13.36□□□□□ -0.27
VPS39-210ENST00000568357 ZNF300Q96RE9 604 aaPredicted RBP13.36□□□□□ -0.27
VPS39-210ENST00000568357 TMUB1Q9BVT8 246 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 ARMC7Q9H6L4 198 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 CACYBPQ9HB71 228 aaKnown RBP13.36□□□□□ -0.27
VPS39-210ENST00000568357 SAR1AQ9NR31 198 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 TMEM181Q9P2C4 612 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 KLHL9Q9P2J3 617 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 CORO2BQ9UQ03 480 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 TRAPPC4Q9Y296 219 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 A0A1W2PPR1 153 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 CASKO14936 926 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 SIAH2O43255 324 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 RAMP1O60894 148 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 HRGP04196 525 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 SLC6A2P23975 617 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 CXCR1P25024 350 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 AQP1P29972 269 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 PRKAR1BP31321 381 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 DNAJA1P31689 397 aaKnown RBP13.35□□□□□ -0.27
VPS39-210ENST00000568357 MAP2K6P52564 334 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 ART1P52961 327 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 OR2B6P58173 313 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 COPZ1P61923 177 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 H3F3AP84243 136 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 BNIP2Q12982 314 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 KLF10Q13118 480 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 NFYCQ13952 458 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 CAPRIN1Q14444 709 aaKnown RBP13.35□□□□□ -0.27
VPS39-210ENST00000568357 GLIPR1L2Q4G1C9 344 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 TFAP2EQ6VUC0 442 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 BEND4Q6ZU67 534 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 STK32CQ86UX6 486 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 CCDC103Q8IW40 242 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 DDIT4LQ96D03 193 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 ZC3HAV1LQ96H79 300 aaKnown RBP13.35□□□□□ -0.27
VPS39-210ENST00000568357 MED18Q9BUE0 208 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 PRR14Q9BWN1 585 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 C6orf203Q9P0P8 240 aaPredicted RBP13.35□□□□□ -0.27
VPS39-210ENST00000568357 PRDM4Q9UKN5 801 aa13.35□□□□□ -0.27
VPS39-210ENST00000568357 ZNF716A6NP11 495 aa13.34□□□□□ -0.27
VPS39-210ENST00000568357 ZNF724A8MTY0 619 aa13.34□□□□□ -0.27
VPS39-210ENST00000568357 DEFB108AA8MXU0 73 aa13.34□□□□□ -0.27
VPS39-210ENST00000568357 GCM2O75603 506 aaPredicted RBP13.34□□□□□ -0.27
VPS39-210ENST00000568357 THBDP07204 575 aa13.34□□□□□ -0.27
VPS39-210ENST00000568357 CD99P14209 185 aa13.34□□□□□ -0.27
VPS39-210ENST00000568357 FPR1P21462 350 aa13.34□□□□□ -0.27
VPS39-210ENST00000568357 NTF4P34130 210 aa13.34□□□□□ -0.27
VPS39-210ENST00000568357 PDK3Q15120 406 aa13.34□□□□□ -0.27
VPS39-210ENST00000568357 ABLIM2Q6H8Q1 611 aa13.34□□□□□ -0.27
VPS39-210ENST00000568357 CXorf67Q86X51 503 aaPredicted RBP13.34□□□□□ -0.27
VPS39-210ENST00000568357 GABRG1Q8N1C3 465 aa13.34□□□□□ -0.27
VPS39-210ENST00000568357 SLC35B4Q969S0 331 aa13.34□□□□□ -0.27
VPS39-210ENST00000568357 WFDC6Q9BQY6 131 aa13.34□□□□□ -0.27
VPS39-210ENST00000568357 TACO1Q9BSH4 297 aaKnown RBP13.34□□□□□ -0.27
VPS39-210ENST00000568357 KAT8Q9H7Z6 458 aaKnown RBP13.34□□□□□ -0.27
VPS39-210ENST00000568357 KLHL14Q9P2G3 628 aa13.34□□□□□ -0.27
VPS39-210ENST00000568357 IGKV3D-15A0A087WSY6 115 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 LOC100653049A0A140TA62 436 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 DNPH1O43598 174 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 KRT34O76011 436 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 MFN2O95140 757 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 OR3A2P47893 321 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 GZMMP51124 257 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 SLC35A1P78382 337 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 DMTNQ08495 405 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 CEACAM7Q14002 265 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 TSC22D1Q15714 1073 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 FBXW10Q5XX13 1052 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 NANOGP8Q6NSW7 305 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 DHRS4L2Q6PKH6 230 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.33□□□□□ -0.28
VPS39-210ENST00000568357 GALNT5Q7Z7M9 940 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 KRT73Q86Y46 540 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 HIPK4Q8NE63 616 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 C10orf82Q8WW14 230 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 C3orf49Q96BT1 292 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 SPATA5L1Q9BVQ7 753 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 POTEKPQ9BYX7 375 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 PLEKHF2Q9H8W4 249 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 NANOGQ9H9S0 305 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 ZNF226Q9NYT6 803 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 PRSS50Q9UI38 385 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 GPR52Q9Y2T5 361 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 MPDZO75970 2070 aa13.33□□□□□ -0.28
VPS39-210ENST00000568357 LIPT2A6NK58 231 aa13.32□□□□□ -0.28
VPS39-210ENST00000568357 M0QX08 132 aa13.32□□□□□ -0.28
VPS39-210ENST00000568357 FXYD1O00168 92 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms