RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 CMTM8Q8IZV2 173 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 SLC34A3Q8N130 599 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 OR8H2Q8N162 312 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 TBC1D19Q8N5T2 526 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 TCEANCQ8N8B7 351 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 SYT14Q8NB59 555 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 OR7G1Q8NGA0 311 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 OR4M1Q8NGD0 313 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 OR4K5Q8NGD3 323 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 OR8D4Q8NGM9 314 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 OR9A1PQ8NGU1 263 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 OR52N1Q8NH53 320 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 OR52J3Q8NH60 311 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 SUN3Q8TAQ9 357 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 ENKURQ8TC29 256 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 SLC7A13Q8TCU3 470 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 CXorf40AQ8TE69 158 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 SETD7Q8WTS6 366 aaKnown RBP2.27□□□□□ -2.05
SPG11-223ENST00000560858 SLC38A5Q8WUX1 472 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 MRPS31Q92665 395 aaKnown RBP2.27□□□□□ -2.05
SPG11-223ENST00000560858 UFD1Q92890 307 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 HGDQ93099 445 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 MIB2Q96AX9 1013 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 UPRTQ96BW1 309 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 TM4SF18Q96CE8 201 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 OTUB2Q96DC9 234 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 ZBED6CLQ96FA7 236 aaPredicted RBP2.27□□□□□ -2.05
SPG11-223ENST00000560858 ZNF514Q96K75 400 aaPredicted RBP2.27□□□□□ -2.05
SPG11-223ENST00000560858 SLC35G5Q96KT7 338 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 LRR1Q96L50 414 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 KCTD7Q96MP8 289 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 ZNF558Q96NG5 402 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 QRFPRQ96P65 431 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 IL4I1Q96RQ9 567 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 ZNF607Q96SK3 696 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 ARHGDIGQ99819 225 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 ATF6BQ99941 703 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 TMEM246Q9BRR3 403 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 ZNF649Q9BS31 505 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 MARVELD1Q9BSK0 173 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 TMEM43Q9BTV4 400 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 RIOK2Q9BVS4 552 aaKnown RBP2.27□□□□□ -2.05
SPG11-223ENST00000560858 SF3B5Q9BWJ5 86 aaKnown RBP2.27□□□□□ -2.05
SPG11-223ENST00000560858 PINK1Q9BXM7 581 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 GON7Q9BXV9 100 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 PLA2G12AQ9BZM1 189 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 NDEL1Q9GZM8 345 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 BTBD1Q9H0C5 482 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 ZBP1Q9H171 429 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 POLR2J3Q9H1A7 115 aaKnown RBP2.27□□□□□ -2.05
SPG11-223ENST00000560858 OR52A5Q9H2C5 316 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 OR51B5Q9H339 312 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 PIGUQ9H490 435 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 DPEP2Q9H4A9 486 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 MVB12BQ9H7P6 319 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 BCL2L10Q9HD36 194 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 RANGRFQ9HD47 186 aaPredicted RBP2.27□□□□□ -2.05
SPG11-223ENST00000560858 ABCB9Q9NP78 766 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 EXOSC4Q9NPD3 245 aaKnown RBP2.27□□□□□ -2.05
SPG11-223ENST00000560858 B3GAT2Q9NPZ5 323 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 LHX9Q9NQ69 397 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 MIEF1Q9NQG6 463 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 DIABLOQ9NR28 239 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP2.27□□□□□ -2.05
SPG11-223ENST00000560858 PLSCR3Q9NRY6 295 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 SNTG1Q9NSN8 517 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 DDX28Q9NUL7 540 aaKnown RBP2.27□□□□□ -2.05
SPG11-223ENST00000560858 MED17Q9NVC6 651 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 RBFOX1Q9NWB1 397 aaKnown RBP2.27□□□□□ -2.05
SPG11-223ENST00000560858 RNF186Q9NXI6 227 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 PAQR5Q9NXK6 330 aaPredicted RBP2.27□□□□□ -2.05
SPG11-223ENST00000560858 SAGE1Q9NXZ1 904 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 TAS2R7Q9NYW3 318 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 SPG21Q9NZD8 308 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 PTTG3PQ9NZH4 202 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 TBC1D14Q9P2M4 693 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 RHCGQ9UBD6 479 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 P2RX2Q9UBL9 471 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 CLEC2DQ9UHP7 191 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 CD84Q9UIB8 345 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 TMCC3Q9ULS5 477 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 NDRG2Q9UN36 371 aaKnown RBP2.27□□□□□ -2.05
SPG11-223ENST00000560858 ENTPD4Q9Y227 616 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 LIPT1Q9Y234 373 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 EXOGQ9Y2C4 368 aaKnown RBP2.27□□□□□ -2.05
SPG11-223ENST00000560858 SLC9A8Q9Y2E8 581 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 KLHL20Q9Y2M5 609 aa2.27□□□□□ -2.05
SPG11-223ENST00000560858 YARS2Q9Y2Z4 477 aaKnown RBP2.27□□□□□ -2.05
SPG11-223ENST00000560858 SPIN1Q9Y657 262 aaPredicted RBP2.27□□□□□ -2.05
SPG11-223ENST00000560858 A0A087WUU8 490 aa2.26□□□□□ -2.05
SPG11-223ENST00000560858 A0A0G2JK05 382 aa2.26□□□□□ -2.05
SPG11-223ENST00000560858 A0A0G2JPF8 293 aa2.26□□□□□ -2.05
SPG11-223ENST00000560858 A0A1W2PPV9 198 aa2.26□□□□□ -2.05
SPG11-223ENST00000560858 LINC00862A6NCI5 91 aa2.26□□□□□ -2.05
SPG11-223ENST00000560858 FABP12A6NFH5 140 aa2.26□□□□□ -2.05
SPG11-223ENST00000560858 SNTNA6NMZ2 147 aa2.26□□□□□ -2.05
SPG11-223ENST00000560858 A8MV72 311 aaPredicted RBP2.26□□□□□ -2.05
SPG11-223ENST00000560858 HNRNPCL2B2RXH8 293 aa2.26□□□□□ -2.05
SPG11-223ENST00000560858 HNRNPCL3B7ZW38 293 aa2.26□□□□□ -2.05
SPG11-223ENST00000560858 C4orf51C9J302 202 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms