RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 HSF2Q03933 536 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 SLC10A1Q14973 349 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 NPTX1Q15818 432 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF766Q5HY98 468 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 GTF2IRD2BQ6EKJ0 949 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 NIPAL3Q6P499 406 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 FAM180AQ6UWF9 173 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 NPSR1Q6W5P4 371 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 KRT77Q7Z794 578 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 GTF2IRD2Q86UP8 949 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 SATL1Q86VE3 508 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF687Q8N1G0 1237 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF676Q8N7Q3 588 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 YIPF7Q8N8F6 280 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 GNPDA2Q8TDQ7 276 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 NPRL2Q8WTW4 380 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 DNAJA4Q8WW22 397 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-209ENST00000560637 ACOT11Q8WXI4 607 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-209ENST00000560637 OSTF1Q92882 214 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 TM4SF19Q96DZ7 209 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 TRIB1Q96RU8 372 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 NMNAT3Q96T66 252 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 GPER1Q99527 375 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 PITX2Q99697 317 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 LHPPQ9H008 270 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 SYT4Q9H2B2 425 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 CLK4Q9HAZ1 481 aaKnown RBP4.98□□□□□ -1.61
VPS13C-209ENST00000560637 PLEKHA1Q9HB21 404 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 TIGARQ9NQ88 270 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 FBXO8Q9NRD0 319 aa4.98□□□□□ -1.61
VPS13C-209ENST00000560637 ING1Q9UK53 422 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-209ENST00000560637 FANCMQ8IYD8 2048 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 A0A096LPE4 126 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 A0A1W2PPZ6 126 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 TCRBV16S1A1N1A0A5B0 115 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 MAGEB4O15481 346 aaPredicted RBP4.97□□□□□ -1.61
VPS13C-209ENST00000560637 HMGN1P05114 100 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 CT45A8P0DMV1 189 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 CT45A9P0DMV2 189 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 HSD11B1P28845 292 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 OR12D2P58182 307 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 HSF1Q00613 529 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF117Q03924 483 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 AIMP2Q13155 320 aaKnown RBP4.97□□□□□ -1.61
VPS13C-209ENST00000560637 RIPK1Q13546 671 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 APOFQ13790 326 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 PDE7AQ13946 482 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 PTGES3Q15185 160 aaKnown RBP4.97□□□□□ -1.61
VPS13C-209ENST00000560637 MICAQ29983 383 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 ARHGAP11BQ3KRB8 267 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 CT45A2Q5DJT8 189 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 HBMQ6B0K9 141 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 HMBOX1Q6NT76 420 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 CXXC5Q7LFL8 322 aaKnown RBP4.97□□□□□ -1.61
VPS13C-209ENST00000560637 PLCZ1Q86YW0 608 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 LINC00346Q8IVM7 164 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 DTX3Q8N9I9 347 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF511Q8NB15 262 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 LSM14AQ8ND56 463 aaKnown RBP4.97□□□□□ -1.61
VPS13C-209ENST00000560637 APOBEC4Q8WW27 367 aaKnown RBP4.97□□□□□ -1.61
VPS13C-209ENST00000560637 INTS12Q96CB8 462 aaKnown RBP4.97□□□□□ -1.61
VPS13C-209ENST00000560637 RNFT2Q96EX2 444 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 TMED9Q9BVK6 235 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 SPATA9Q9BWV2 254 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 TRIM4Q9C037 500 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 GORASP2Q9H8Y8 452 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 UCK1Q9HA47 277 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 VNN3Q9NY84 501 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 FBXL2Q9UKC9 423 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 MCTS1Q9ULC4 181 aaKnown RBP4.97□□□□□ -1.61
VPS13C-209ENST00000560637 REV3LO60673 3130 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 WNK2Q9Y3S1 2297 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 TCRBV3S1A0A5B6 114 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 FAM25AB3EWG3 89 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 FAM25CB3EWG5 89 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 FAM25GB3EWG6 89 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 PLOD2O00469 737 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 BCAS1O75363 584 aaPredicted RBP4.97□□□□□ -1.61
VPS13C-209ENST00000560637 DKK1O94907 266 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 NDUFB2O95178 105 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 SLC2A10O95528 541 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 SERPINA7P05543 415 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 ANXA2P07355 339 aaKnown RBP4.97□□□□□ -1.61
VPS13C-209ENST00000560637 LYNP07948 512 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 LIPCP11150 499 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 SLC2A1P11166 492 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 PNLIPP16233 465 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 CELP19835 753 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 GSTM3P21266 225 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 IDUAP35475 653 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 MAGEA5P43359 124 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 MEOX1P50221 254 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 RPS6KA3P51812 740 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 BIDP55957 195 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 CLDN15P56746 228 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 ST3GAL4Q11206 333 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 IL10RAQ13651 578 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 MAPK11Q15759 364 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 TMEM201Q5SNT2 666 aa4.97□□□□□ -1.61
VPS13C-209ENST00000560637 ZNF468Q5VIY5 522 aaPredicted RBP4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms