RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 TMPPEQ6ZT21 453 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 FJX1Q86VR8 437 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 RBM45Q8IUH3 476 aaKnown RBP9.06□□□□□ -0.96
USP3-216ENST00000559873 OR4D11Q8NGI4 311 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 OR10Q1Q8NGQ4 319 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 SLC41A3Q96GZ6 507 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 ZFP3Q96NJ6 502 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 ZNF347Q96SE7 839 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 NPAS1Q99742 590 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 TUBA1CQ9BQE3 449 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 TMEM43Q9BTV4 400 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 FNDC11Q9BVV2 318 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 POTEKPQ9BYX7 375 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 SLC19A3Q9BZV2 496 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 KLHL4Q9C0H6 718 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 ANKRD19PQ9H560 264 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 YY1AP1Q9H869 796 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 KRCC1Q9NPI7 259 aaPredicted RBP9.06□□□□□ -0.96
USP3-216ENST00000559873 SLC7A8Q9UHI5 535 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 POMPQ9Y244 141 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 MEMO1Q9Y316 297 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 ENPP4Q9Y6X5 453 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 HIVEP3Q5T1R4 2406 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 MED12Q93074 2177 aa9.06□□□□□ -0.96
USP3-216ENST00000559873 GTF3C1Q12789 2109 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 TRAV36DV7A0A075B6V5 113 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 A0A0J9YW62 118 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 A0A1W2PNR3 127 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 DHRS12A0PJE2 317 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 ACOT8O14734 319 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 ZNHIT1O43257 154 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 LRRTM2O43300 516 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 CXCL13O43927 109 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 TPST2O60704 377 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 EIF1BO60739 113 aaKnown RBP9.05□□□□□ -0.96
USP3-216ENST00000559873 IL2RAP01589 272 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 RAP2AP10114 183 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 RHCEP18577 417 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 IL11P20809 199 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 ENPP1P22413 925 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 RBM34P42696 430 aaKnown RBP9.05□□□□□ -0.96
USP3-216ENST00000559873 DIO1P49895 249 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 SMIM11AP58511 58 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 RAC3P60763 192 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 MYBPHQ13203 477 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 PIN1Q13526 163 aaPredicted RBP9.05□□□□□ -0.96
USP3-216ENST00000559873 TRAM2Q15035 370 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 PON3Q15166 354 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 ZNF239Q16600 458 aaKnown RBP9.05□□□□□ -0.96
USP3-216ENST00000559873 CTU2Q2VPK5 515 aaKnown RBP9.05□□□□□ -0.96
USP3-216ENST00000559873 RIPPLY2Q5TAB7 128 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 EEF1A1P5Q5VTE0 462 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 C1orf140Q5VVS0 124 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 GTF2IRD2BQ6EKJ0 949 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 TTC33Q6PID6 262 aaPredicted RBP9.05□□□□□ -0.96
USP3-216ENST00000559873 ASRGL1Q7L266 308 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 GDF7Q7Z4P5 450 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 GTF2IRD2Q86UP8 949 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 SPATA24Q86W54 205 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 MCEMP1Q8IX19 187 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 WNT2BQ93097 391 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 ZNF524Q96C55 264 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 RSRC1Q96IZ7 334 aaKnown RBP9.05□□□□□ -0.96
USP3-216ENST00000559873 ADGRG7Q96K78 797 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 HS6ST2Q96MM7 605 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 ZNF300Q96RE9 604 aaPredicted RBP9.05□□□□□ -0.96
USP3-216ENST00000559873 UCN2Q96RP3 112 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 SEPHS2Q99611 448 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 WFDC6Q9BQY6 131 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 TACO1Q9BSH4 297 aaKnown RBP9.05□□□□□ -0.96
USP3-216ENST00000559873 RSPO3Q9BXY4 272 aaPredicted RBP9.05□□□□□ -0.96
USP3-216ENST00000559873 AMBRA1Q9C0C7 1298 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 OR11A1Q9GZK7 315 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 COQ10BQ9H8M1 238 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 COQ3Q9NZJ6 369 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 C6orf203Q9P0P8 240 aaPredicted RBP9.05□□□□□ -0.96
USP3-216ENST00000559873 CLCF1Q9UBD9 225 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 RIMS3Q9UJD0 308 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 SLC7A7Q9UM01 511 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 TRAPPC4Q9Y296 219 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 FAM215AQ9Y5M1 114 aa9.05□□□□□ -0.96
USP3-216ENST00000559873 FASNP49327 2511 aaKnown RBP9.04□□□□□ -0.96
USP3-216ENST00000559873 LRRK2Q5S007 2527 aa9.04□□□□□ -0.96
USP3-216ENST00000559873 TCRBV5S2A0A599 114 aa9.04□□□□□ -0.96
USP3-216ENST00000559873 HTR3EA5X5Y0 456 aa9.04□□□□□ -0.96
USP3-216ENST00000559873 MBD3L4A6NDZ8 208 aaPredicted RBP9.04□□□□□ -0.96
USP3-216ENST00000559873 MBD3L3A6NE82 208 aaPredicted RBP9.04□□□□□ -0.96
USP3-216ENST00000559873 MBD3L5A6NJ08 208 aaPredicted RBP9.04□□□□□ -0.96
USP3-216ENST00000559873 HSPB2A8KAH6 182 aa9.04□□□□□ -0.96
USP3-216ENST00000559873 H0YC42 278 aa9.04□□□□□ -0.96
USP3-216ENST00000559873 hCG_2039718K7EN88 272 aa9.04□□□□□ -0.96
USP3-216ENST00000559873 EFNA2O43921 213 aa9.04□□□□□ -0.96
USP3-216ENST00000559873 NPIPB7O75200 414 aa9.04□□□□□ -0.96
USP3-216ENST00000559873 AGFG2O95081 481 aa9.04□□□□□ -0.96
USP3-216ENST00000559873 PLGP00747 810 aaPredicted RBP9.04□□□□□ -0.96
USP3-216ENST00000559873 MT-ATP6P00846 226 aa9.04□□□□□ -0.96
USP3-216ENST00000559873 OPN1LWP04000 364 aa9.04□□□□□ -0.96
USP3-216ENST00000559873 SEMG1P04279 462 aa9.04□□□□□ -0.96
USP3-216ENST00000559873 CRHP06850 196 aa9.04□□□□□ -0.96
USP3-216ENST00000559873 H1F0P07305 194 aaKnown RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms