RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 STSP08842 583 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 CT62P0C5K7 136 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 ZNF735P0CB33 412 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 PABPC4LP0CB38 370 aaKnown RBP1.21□□□□□ -2.22
USP3-209ENST00000558925 HSMCR30P0CW71 290 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 RNF224P0DH78 156 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 TOP1P11387 765 aaKnown RBP1.21□□□□□ -2.22
USP3-209ENST00000558925 CCDC130P13994 396 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 MX1P20591 662 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 ATP6V1B2P21281 511 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 RBMXP38159 391 aaKnown RBP1.21□□□□□ -2.22
USP3-209ENST00000558925 KIR2DS2P43631 304 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 TDO2P48775 406 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 VEGFCP49767 419 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 EFNA3P52797 238 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 SUCLG1P53597 346 aaKnown RBP1.21□□□□□ -2.22
USP3-209ENST00000558925 PRMT2P55345 433 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 RPL23AP62750 156 aaKnown RBP1.21□□□□□ -2.22
USP3-209ENST00000558925 GBE1Q04446 702 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 TGM3Q08188 693 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 NCBP1Q09161 790 aaKnown RBP1.21□□□□□ -2.22
USP3-209ENST00000558925 PPIL2Q13356 520 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 MESDQ14696 234 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 AANATQ16613 207 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 DUSP7Q16829 419 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 C15orf32Q32M92 178 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 NSUN5P1Q3KNT7 163 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 ALKBH6Q3KRA9 238 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 OR2B11Q5JQS5 317 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 CTSL3PQ5NE16 218 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 C1orf220Q5T0J3 134 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 MARC1Q5VT66 337 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 OR5M10Q6IEU7 315 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 OR52E8Q6IFG1 317 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 ZNF774Q6NX45 483 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 ZNF544Q6NX49 715 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 CCDC137Q6PK04 289 aaKnown RBP1.21□□□□□ -2.22
USP3-209ENST00000558925 PAMR1Q6UXH9 720 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 TAS2R42Q7RTR8 314 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 CTAGE6Q86UF2 777 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 MYPOPQ86VE0 399 aaPredicted RBP1.21□□□□□ -2.22
USP3-209ENST00000558925 TRIM69Q86WT6 500 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 CCDC65Q8IXS2 484 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 CEND1Q8N111 149 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 GPR137CQ8N3F9 429 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP1.21□□□□□ -2.22
USP3-209ENST00000558925 OR4K14Q8NGD5 310 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 OR9K2Q8NGE7 335 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 OR13F1Q8NGS4 319 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 ZNF564Q8TBZ8 553 aaPredicted RBP1.21□□□□□ -2.22
USP3-209ENST00000558925 ZPLD1Q8TCW7 415 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 MAGEE2Q8TD90 523 aaPredicted RBP1.21□□□□□ -2.22
USP3-209ENST00000558925 MAIP1Q8WWC4 291 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 CHCHD10Q8WYQ3 142 aaPredicted RBP1.21□□□□□ -2.22
USP3-209ENST00000558925 UBE2E3Q969T4 207 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 RPUSD4Q96CM3 377 aaKnown RBP1.21□□□□□ -2.22
USP3-209ENST00000558925 CMTM7Q96FZ5 175 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 PGLYRP4Q96LB8 373 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 FOXN4Q96NZ1 517 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 SIGLEC12Q96PQ1 595 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 CLCC1Q96S66 551 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 PLEKHF1Q96S99 279 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 GAL3ST1Q99999 423 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 MAPKAP1Q9BPZ7 522 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 CCDC77Q9BR77 488 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 MRPL45Q9BRJ2 306 aaKnown RBP1.21□□□□□ -2.22
USP3-209ENST00000558925 TUBGCP2Q9BSJ2 902 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 PAXXQ9BUH6 204 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 NUP58Q9BVL2 599 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 SRXN1Q9BYN0 137 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 UBXN6Q9BZV1 441 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 NMUR2Q9GZQ4 415 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 PPA2Q9H2U2 334 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 Q9H3A6 140 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 ANKRA2Q9H9E1 313 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 NMRAL1Q9HBL8 299 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 NANSQ9NR45 359 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 ZNF275Q9NSD4 429 aaPredicted RBP1.21□□□□□ -2.22
USP3-209ENST00000558925 THUMPD1Q9NXG2 353 aaKnown RBP1.21□□□□□ -2.22
USP3-209ENST00000558925 DPM3Q9P2X0 92 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 RABL2AQ9UBK7 228 aaPredicted RBP1.21□□□□□ -2.22
USP3-209ENST00000558925 KLHL21Q9UJP4 597 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 KCNIP3Q9Y2W7 256 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 PLLPQ9Y342 182 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 FLVCR1Q9Y5Y0 555 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 NSD2O96028 1365 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP1.21□□□□□ -2.22
USP3-209ENST00000558925 TDRD6O60522 2096 aaKnown RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 TTC21BQ7Z4L5 1316 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 CLSPNQ9HAW4 1339 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 SCN2AQ99250 2005 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 ATP10AO60312 1499 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 IGLV3-22A0A075B6J6 115 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 NSG1A0A0A6YYJ2 146 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 IQANK1A0A1B0GTG1 560 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 RBMY1BA6NDE4 496 aaKnown RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 RBMY1EA6NEQ0 496 aaKnown RBP1.2□□□□□ -2.22
USP3-209ENST00000558925 A8MXQ7 604 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 E7ESA3 106 aa1.2□□□□□ -2.22
USP3-209ENST00000558925 SGK1O00141 431 aa1.2□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms