RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 TUFMP49411 452 aaKnown RBP3.6□□□□□ -1.83
PRPF39-209ENST00000556353 ZNF41P51814 821 aaPredicted RBP3.6□□□□□ -1.83
PRPF39-209ENST00000556353 CBX1P83916 185 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 CYP24A1Q07973 514 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 CBX3Q13185 183 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 DNAJC3Q13217 504 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 BCL2A1Q16548 175 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 SNRNP35Q16560 246 aaKnown RBP3.6□□□□□ -1.83
PRPF39-209ENST00000556353 KYNUQ16719 465 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 SMU1Q2TAY7 513 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 CCDC153Q494R4 210 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 LRRC23Q53EV4 343 aaPredicted RBP3.6□□□□□ -1.83
PRPF39-209ENST00000556353 LBHQ53QV2 105 aaPredicted RBP3.6□□□□□ -1.83
PRPF39-209ENST00000556353 TCP11X2Q5H9J9 407 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 C1orf220Q5T0J3 134 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 N4BP2L1Q5TBK1 243 aaPredicted RBP3.6□□□□□ -1.83
PRPF39-209ENST00000556353 ARMCX5Q6P1M9 558 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 TMEM53Q6P2H8 277 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 PAQR9Q6ZVX9 377 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 PRR22Q8IZ63 422 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 LINC00301Q8NCQ3 95 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 LRRC39Q96DD0 335 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 HPDLQ96IR7 371 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 CEP19Q96LK0 163 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 ZNF560Q96MR9 790 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 FAM111AQ96PZ2 611 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 P2RY13Q9BPV8 354 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 C9orf16Q9BUW7 83 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 FUT8Q9BYC5 575 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 TRIM4Q9C037 500 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 HSD3B7Q9H2F3 369 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 BLZF1Q9H2G9 400 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 C12orf10Q9HB07 376 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 AGPAT3Q9NRZ7 376 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 SLC35D1Q9NTN3 355 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 DUS2Q9NX74 493 aaKnown RBP3.6□□□□□ -1.83
PRPF39-209ENST00000556353 AKAP7Q9P0M2 348 aaPredicted RBP3.6□□□□□ -1.83
PRPF39-209ENST00000556353 GMEB2Q9UKD1 530 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 ITGA11Q9UKX5 1188 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 SNX7Q9UNH6 387 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 STK38LQ9Y2H1 464 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 LIPGQ9Y5X9 500 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 CPQQ9Y646 472 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 USP9YO00507 2555 aaPredicted RBP3.6□□□□□ -1.83
PRPF39-209ENST00000556353 SCN8AQ9UQD0 1980 aa3.6□□□□□ -1.83
PRPF39-209ENST00000556353 UNC13CQ8NB66 2214 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 DOPEY2Q9Y3R5 2298 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 UQCRHLA0A096LP55 91 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 TRAV19A0A0A6YYK7 116 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 TEX48A0A1B0GUV7 120 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 LOC390937A0A1W2PQ73 354 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 FAM92AA1XBS5 289 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 SRRM4A7MD48 611 aaKnown RBP3.59□□□□□ -1.83
PRPF39-209ENST00000556353 H0Y9J4 135 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 K7ERQ8 282 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 CDX4O14627 284 aaPredicted RBP3.59□□□□□ -1.83
PRPF39-209ENST00000556353 COCHO43405 550 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 ATP8B1O43520 1251 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 HUS1O60921 280 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 IFNB1P01574 187 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 HLA-DRAP01903 254 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 UQCRHP07919 91 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 ZDHHC11BP0C7U3 371 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 ZNF806P0C7X5 589 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 RALAP11233 206 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 CCDC130P13994 396 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 POU2F1P14859 743 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 WARSP23381 471 aaKnown RBP3.59□□□□□ -1.83
PRPF39-209ENST00000556353 HSPA13P48723 471 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 MYL6P60660 151 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 TSPAN5P62079 268 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 POLR2GP62487 172 aaKnown RBP eCLIP3.59□□□□□ -1.83
PRPF39-209ENST00000556353 TPM4P67936 248 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 S100A12P80511 92 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 SLC7A9P82251 487 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 OTUD4Q01804 1114 aaKnown RBP3.59□□□□□ -1.83
PRPF39-209ENST00000556353 NAAAQ02083 359 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 KDSRQ06136 332 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 RBBP4Q09028 425 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 C17orf67Q0P5P2 114 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 ASPHQ12797 758 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 SMARCB1Q12824 385 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 CNTN1Q12860 1018 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 CHIT1Q13231 466 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 FASTKQ14296 549 aaKnown RBP3.59□□□□□ -1.83
PRPF39-209ENST00000556353 DMC1Q14565 340 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 ARHGAP19Q14CB8 494 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 PDGFRLQ15198 375 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 ZNF79Q15937 498 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 MOGQ16653 247 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 RFTN2Q52LD8 501 aaPredicted RBP3.59□□□□□ -1.83
PRPF39-209ENST00000556353 BEND6Q5SZJ8 279 aaPredicted RBP3.59□□□□□ -1.83
PRPF39-209ENST00000556353 SPOPLQ6IQ16 392 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 SLC25A24Q6NUK1 477 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 NEPROQ6NW34 567 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 METAP1DQ6UB28 335 aaPredicted RBP3.59□□□□□ -1.83
PRPF39-209ENST00000556353 BTNL8Q6UX41 500 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 SCARA5Q6ZMJ2 495 aa3.59□□□□□ -1.83
PRPF39-209ENST00000556353 KRTAP5-5Q701N2 237 aaPredicted RBP3.59□□□□□ -1.83
PRPF39-209ENST00000556353 RABEPKQ7Z6M1 372 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms