RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 C3orf49Q96BT1 292 aa12.21□□□□□ -0.45
SHMT2-219ENST00000555563 LRRC58Q96CX6 371 aa12.21□□□□□ -0.45
SHMT2-219ENST00000555563 DDIT4LQ96D03 193 aa12.21□□□□□ -0.45
SHMT2-219ENST00000555563 ZHX1-C8orf76Q96EF9 292 aa12.21□□□□□ -0.45
SHMT2-219ENST00000555563 DACH2Q96NX9 599 aa12.21□□□□□ -0.45
SHMT2-219ENST00000555563 ZNF607Q96SK3 696 aa12.21□□□□□ -0.45
SHMT2-219ENST00000555563 TACO1Q9BSH4 297 aaKnown RBP12.21□□□□□ -0.45
SHMT2-219ENST00000555563 BCO1Q9HAY6 547 aa12.21□□□□□ -0.45
SHMT2-219ENST00000555563 ANKHD1Q8IWZ3 2542 aaKnown RBP12.21□□□□□ -0.45
SHMT2-219ENST00000555563 ABCA12Q86UK0 2595 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 LOC100653049A0A140TA62 436 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 FAM221AA4D161 298 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 PRORSD1PA6NEY8 169 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 ZNF814B7Z6K7 855 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 SLC22A2O15244 555 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 DNPH1O43598 174 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 KRT34O76011 436 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 MFN2O95140 757 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 OPN1SWP03999 348 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 YES1P07947 543 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 HTR2AP28223 471 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 GZMMP51124 257 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 MAP2K6P52564 334 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 RIPPLY3P57055 190 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 OR2B6P58173 313 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 DMTNQ08495 405 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 BNIP2Q12982 314 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 CYLC2Q14093 348 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-219ENST00000555563 DAZAP2Q15038 168 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-219ENST00000555563 NANOGP8Q6NSW7 305 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 SPATA21Q7Z572 469 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 MTDHQ86UE4 582 aaKnown RBP12.2□□□□□ -0.46
SHMT2-219ENST00000555563 ARMC8Q8IUR7 673 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 POU5F2Q8N7G0 328 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 KLHL4Q9C0H6 718 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 CLEC4MQ9H2X3 399 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-219ENST00000555563 NANOGQ9H9S0 305 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 RASSF1Q9NS23 344 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 KLHL28Q9NXS3 571 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 TMEM181Q9P2C4 612 aa12.2□□□□□ -0.46
SHMT2-219ENST00000555563 IGKV3D-15A0A087WSY6 115 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 TMEM229AB2RXF0 380 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 C16orf97H3BN30 126 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 RAMP1O60894 148 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 GCM2O75603 506 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-219ENST00000555563 SERPINB7O75635 380 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 CXCR1P25024 350 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 RGS8P57771 180 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-219ENST00000555563 SLC35A1P78382 337 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 ATG4DQ86TL0 474 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-219ENST00000555563 CDH24Q86UP0 819 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 SLC30A8Q8IWU4 369 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 SMYD1Q8NB12 490 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 OR8J3Q8NGG0 315 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 PIGXQ8TBF5 258 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 NRGNQ92686 78 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 RCN3Q96D15 328 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 WFIKKN1Q96NZ8 548 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 ELAC2Q9BQ52 826 aaKnown RBP12.19□□□□□ -0.46
SHMT2-219ENST00000555563 MED18Q9BUE0 208 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 POLDIP3Q9BY77 421 aaKnown RBP12.19□□□□□ -0.46
SHMT2-219ENST00000555563 FAM107BQ9H098 131 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 PIF1Q9H611 641 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 TESQ9UGI8 421 aaKnown RBP12.19□□□□□ -0.46
SHMT2-219ENST00000555563 NDRG3Q9UGV2 375 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 PRDM4Q9UKN5 801 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 TRAPPC4Q9Y296 219 aa12.19□□□□□ -0.46
SHMT2-219ENST00000555563 LIPT2A6NK58 231 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 ZNF716A6NP11 495 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 ZNF724A8MTY0 619 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 A8MVM7 634 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 M0R3H8 397 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 CCDC22O60826 627 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 NPPAP01160 153 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 FPR1P21462 350 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 EDNRAP25101 427 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 LSP1P33241 339 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 IDUAP35475 653 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 GYS2P54840 703 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 NCALDP61601 193 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 H3F3AP84243 136 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 PDK3Q15120 406 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 POU4F3Q15319 338 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 VMACQ2NL98 169 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 ANKRD34AQ69YU3 496 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 C6orf89Q6UWU4 347 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 STAC2Q6ZMT1 411 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 BEND4Q6ZU67 534 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.18□□□□□ -0.46
SHMT2-219ENST00000555563 CALHM3Q86XJ0 350 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 CCDC103Q8IW40 242 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 GABRG1Q8N1C3 465 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 LSMEM1Q8N8F7 131 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 PCYOX1LQ8NBM8 494 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 BHLHE22Q8NFJ8 381 aaPredicted RBP12.18□□□□□ -0.46
SHMT2-219ENST00000555563 GPR32P1Q8NGA4 272 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 ZNF775Q96BV0 537 aaPredicted RBP12.18□□□□□ -0.46
SHMT2-219ENST00000555563 SH3GL1Q99961 368 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 WFDC6Q9BQY6 131 aa12.18□□□□□ -0.46
SHMT2-219ENST00000555563 PRR14Q9BWN1 585 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms