RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 AQP11Q8NBQ7 271 aa13.11□□□□□ -0.31
SHMT2-210ENST00000553950 POC1BQ8TC44 478 aa13.11□□□□□ -0.31
SHMT2-210ENST00000553950 GNPDA2Q8TDQ7 276 aa13.11□□□□□ -0.31
SHMT2-210ENST00000553950 BPIFA2Q96DR5 249 aa13.11□□□□□ -0.31
SHMT2-210ENST00000553950 SGTBQ96EQ0 304 aa13.11□□□□□ -0.31
SHMT2-210ENST00000553950 TAPBPLQ9BX59 468 aa13.11□□□□□ -0.31
SHMT2-210ENST00000553950 SLC25A18Q9H1K4 315 aa13.11□□□□□ -0.31
SHMT2-210ENST00000553950 FKRPQ9H9S5 495 aa13.11□□□□□ -0.31
SHMT2-210ENST00000553950 LHX6Q9UPM6 363 aa13.11□□□□□ -0.31
SHMT2-210ENST00000553950 RPH3AQ9Y2J0 694 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-210ENST00000553950 TPRP12270 2363 aaKnown RBP13.1□□□□□ -0.31
SHMT2-210ENST00000553950 DMXL2Q8TDJ6 3036 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 TMEM72A0PK05 275 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 ENO4A6NNW6 628 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 H0YJX3 145 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 EI24O14681 340 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 IGHG3P01860 377 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 TFPIP10646 304 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 PEPDP12955 493 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 IFI30P13284 250 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 CBLP22681 906 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 IDUAP35475 653 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 RFC3P40938 356 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 PTDSS1P48651 473 aaKnown RBP13.1□□□□□ -0.31
SHMT2-210ENST00000553950 PPP2R2BQ00005 443 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 KLRB1Q12918 225 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 TSPAN31Q12999 210 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 SEC23BQ15437 767 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 NHSL2Q5HYW2 709 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 WIPI1Q5MNZ9 446 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-210ENST00000553950 C1orf140Q5VVS0 124 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 C1orf94Q6P1W5 598 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 PGBD2Q6P3X8 592 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 YRDCQ86U90 279 aaKnown RBP13.1□□□□□ -0.31
SHMT2-210ENST00000553950 PARP8Q8N3A8 854 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 CBR4Q8N4T8 237 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 OR9Q2Q8NGE9 314 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 ZHX1-C8orf76Q96EF9 292 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 KLHDC3Q9BQ90 382 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 LDAHQ9H6V9 325 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 EXO5Q9H790 373 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 PAPOLBQ9NRJ5 636 aaKnown RBP13.1□□□□□ -0.31
SHMT2-210ENST00000553950 KRT84Q9NSB2 600 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 PAQR5Q9NXK6 330 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-210ENST00000553950 ZNF229Q9UJW7 825 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 CORINQ9Y5Q5 1042 aa13.1□□□□□ -0.31
SHMT2-210ENST00000553950 IGKV1D-42A0A075B6H8 117 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 TRGV5A0A0B4J1U4 118 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 EFCAB9A8MZ26 197 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 H3BML4 177 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 KPNA4O00629 521 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-210ENST00000553950 NPIPB7O75200 414 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 ALPLP05186 524 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 SAGP10523 405 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-210ENST00000553950 MAP1BP46821 2468 aaKnown RBP13.09□□□□□ -0.31
SHMT2-210ENST00000553950 OMPP47874 163 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 GFRA1P56159 465 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 B3GALT5-AS1P59052 145 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 CSNK2A1P68400 391 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-210ENST00000553950 BCL2A1Q16548 175 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 ST3GAL2Q16842 350 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 ZNF770Q6IQ21 691 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-210ENST00000553950 PPP4R4Q6NUP7 873 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 CD300LDQ6UXZ3 194 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 ESPNLQ6ZVH7 1005 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 TMPRSS11FQ6ZWK6 438 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 MAMDC2Q7Z304 686 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-210ENST00000553950 TMEM179BQ7Z7N9 219 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 MEIOBQ8N635 442 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 CLDN22Q8N7P3 220 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 PFN4Q8NHR9 129 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 MFSD8Q8NHS3 518 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 NEIL3Q8TAT5 605 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 KLHL15Q96M94 604 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 FEVQ99581 238 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 ASPNQ9BXN1 380 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 MFRPQ9BY79 579 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 ZNF71Q9NQZ8 489 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-210ENST00000553950 ZNF337Q9Y3M9 751 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 DNAJC13O75165 2243 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 LOC400499M0QZD8 3231 aa13.09□□□□□ -0.31
SHMT2-210ENST00000553950 K7EM74 188 aa13.08□□□□□ -0.32
SHMT2-210ENST00000553950 FZD7O75084 574 aa13.08□□□□□ -0.32
SHMT2-210ENST00000553950 OR7A10O76100 309 aa13.08□□□□□ -0.32
SHMT2-210ENST00000553950 PMS2P2O95744 297 aa13.08□□□□□ -0.32
SHMT2-210ENST00000553950 CCNA2P20248 432 aa13.08□□□□□ -0.32
SHMT2-210ENST00000553950 TCEA1P23193 301 aaKnown RBP13.08□□□□□ -0.32
SHMT2-210ENST00000553950 GPR4P46093 362 aa13.08□□□□□ -0.32
SHMT2-210ENST00000553950 GSSP48637 474 aa13.08□□□□□ -0.32
SHMT2-210ENST00000553950 RPS3AP61247 264 aaKnown RBP13.08□□□□□ -0.32
SHMT2-210ENST00000553950 PMP22Q01453 160 aa13.08□□□□□ -0.32
SHMT2-210ENST00000553950 FOXD4Q12950 439 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-210ENST00000553950 PPP1R8Q12972 351 aaKnown RBP13.08□□□□□ -0.32
SHMT2-210ENST00000553950 ZNF74Q16587 644 aa13.08□□□□□ -0.32
SHMT2-210ENST00000553950 LRRC36Q1X8D7 754 aa13.08□□□□□ -0.32
SHMT2-210ENST00000553950 LPCAT4Q643R3 524 aa13.08□□□□□ -0.32
SHMT2-210ENST00000553950 KDM4DQ6B0I6 523 aa13.08□□□□□ -0.32
SHMT2-210ENST00000553950 PM20D2Q8IYS1 436 aa13.08□□□□□ -0.32
SHMT2-210ENST00000553950 C10orf53Q8N6V4 93 aa13.08□□□□□ -0.32
SHMT2-210ENST00000553950 SCAIQ8N9R8 606 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms