RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 OR2B6P58173 313 aa9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 MAGOHP61326 146 aaKnown RBP9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 H3F3AP84243 136 aa9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 TGFBR3Q03167 851 aa9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 FUT5Q11128 374 aa9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 LARS2Q15031 903 aaKnown RBP9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 TSC22D1Q15714 1073 aa9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 STK11Q15831 433 aa9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 SYPL1Q16563 259 aa9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 ZNF672Q499Z4 452 aaPredicted RBP9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 LIN52Q52LA3 116 aa9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 TMEM108Q6UXF1 575 aa9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 OLIG3Q7RTU3 272 aa9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 DEPDC4Q8N2C3 294 aa9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 UBE2J2Q8N2K1 259 aa9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 ZNF433Q8N7K0 673 aaPredicted RBP9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 ANKFN1Q8N957 763 aa9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 CNOT9Q92600 299 aaKnown RBP9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 ZNF775Q96BV0 537 aaPredicted RBP9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 INPP5KQ9BT40 448 aa9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 TAS2R16Q9NYV7 291 aa9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 PRSS50Q9UI38 385 aa9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 OSGIN1Q9UJX0 560 aa9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 TMED7Q9Y3B3 224 aa9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 NIPBLQ6KC79 2804 aaeCLIP9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 VPS13CQ709C8 3753 aa9.62□□□□□ -0.87
VTI1BP3-201ENST00000550220 A0A096LPI6 279 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 A0A0G2JPF8 293 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 A0A1W2PP18 115 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 CDHR4A6H8M9 788 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 CCT8L1PA6NM43 557 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 ZNF716A6NP11 495 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 HNRNPCL2B2RXH8 293 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 HNRNPCL3B7ZW38 293 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 OVOL3O00110 214 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 HNRNPCL1O60812 293 aaKnown RBP9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 TGDSO95455 350 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 LY6G6DO95868 133 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 GSNP06396 782 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 GPIP06744 558 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 CHRM4P08173 479 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 DANCRP0C864 163 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 HNRNPCL4P0DMR1 293 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 CXCR1P25024 350 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 TACR3P29371 465 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 CRATP43155 626 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 BSPH1Q075Z2 132 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 EPS8Q12929 822 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 MRPL2Q5T653 305 aaKnown RBP9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 PRAMEF8Q5VWM4 474 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 PRAMEF7Q5VXH5 474 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 WBP2NLQ6ICG8 309 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 PAQR6Q6TCH4 344 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 MIER2Q8N344 545 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 C17orf78Q8N4C9 275 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 OR52P1PQ8NH57 321 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 MGARPQ8TDB4 240 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 SLC35B4Q969S0 331 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 ARL5BQ96KC2 179 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 MUS81Q96NY9 551 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 SMR3AQ99954 134 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 SF3B5Q9BWJ5 86 aaKnown RBP9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 TRIM2Q9C040 744 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 ADAM19Q9H013 955 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 ALG2Q9H553 416 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 TPT1P8Q9HAU6 139 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 BARX1Q9HBU1 254 aaPredicted RBP9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 CISD1Q9NZ45 108 aaKnown RBP9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 UPB1Q9UBR1 384 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 MALT1Q9UDY8 824 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 IFT52Q9Y366 437 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 MAGED1Q9Y5V3 778 aaPredicted RBP9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 DSCAMO60469 2012 aa9.61□□□□□ -0.87
VTI1BP3-201ENST00000550220 USF3Q68DE3 2245 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 HIVEP2P31629 2446 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 TMEM72A0PK05 275 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 DPRXA6NFQ7 191 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 TRIM64A6NGJ6 449 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 TRIM64BA6NI03 449 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 OR6C65A6NJZ3 312 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 CLDN24A6NM45 220 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 BCAS1O75363 584 aaPredicted RBP9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 VAMP5O95183 116 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 THBS1P07996 1170 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 TFPTP0C1Z6 253 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 BMP4P12644 408 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 CDKN2CP42773 168 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 POLR2JP52435 117 aaKnown RBP9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 DSTNP60981 165 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 STX1BP61266 288 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 IRX1P78414 480 aaPredicted RBP9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 PPP2R2BQ00005 443 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 NRF1Q16656 503 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 COX20Q5RI15 118 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 C6orf10Q5SRN2 563 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 RNF220Q5VTB9 566 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 AGAP6Q5VW22 663 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 ABHD12BQ7Z5M8 362 aaPredicted RBP9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 POMGNT2Q8NAT1 580 aa9.6□□□□□ -0.87
VTI1BP3-201ENST00000550220 C1orf162Q8NEQ5 155 aaPredicted RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms