RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 POU3F3P20264 500 aaPredicted RBP16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 F8A1P23610 371 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 SLC37A1P57057 533 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 ACTC1P68032 377 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 ACTA1P68133 377 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 GRM7Q14831 915 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 UBXN2BQ14CS0 331 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 C14orf28Q4W4Y0 310 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 IDNKQ5T6J7 187 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 FNDC7Q5VTL7 733 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 OGFOD3Q6PK18 319 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 METAP1DQ6UB28 335 aaPredicted RBP16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 TTLL10Q6ZVT0 673 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 UBE2J2Q8N2K1 259 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 Q8N402 240 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 FAM71CQ8NEG0 241 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 ABHD4Q8TB40 342 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 YIPF2Q9BWQ6 316 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 CHRNA10Q9GZZ6 450 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 B3GAT2Q9NPZ5 323 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 IGKV1D-42A0A075B6H8 117 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 TTC36A6NLP5 189 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 TFECO14948 347 aaPredicted RBP16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 CCNKO75909 580 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 PYCR1P32322 319 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 RPL4P36578 427 aaKnown RBP16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 NKX2-5P52952 324 aaPredicted RBP16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 TAS2R43P59537 309 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 RPL6Q02878 288 aaKnown RBP16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 IL18Q14116 193 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 DMKNQ6E0U4 476 aaPredicted RBP16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 ZNF544Q6NX49 715 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 GHDCQ8N2G8 530 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 PELOQ9BRX2 385 aaKnown RBP16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 HOXD1Q9GZZ0 328 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 CUTCQ9NTM9 273 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 EPHA6Q9UF33 1036 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 KLHL21Q9UJP4 597 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 RNF215Q9Y6U7 377 aa16.97■□□□□ 0.31
PRPF40B-208ENST00000548436 UNC13CQ8NB66 2214 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 RP1P56715 2156 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 PPM1BO75688 479 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 SC5DO75845 299 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 OR7A10O76100 309 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 HLA-DQB1P01920 261 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 SLC2A2P11168 524 aaPredicted RBP16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 ALAS2P22557 587 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 HNRNPKP61978 463 aaKnown RBP eCLIP16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 TP53I3Q53FA7 332 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 CBLN3Q6UW01 205 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 APOOLQ6UXV4 268 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 DPY19L2P2Q6ZN68 376 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 CEACAM19Q7Z692 300 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 NPEPL1Q8NDH3 523 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 CADM4Q8NFZ8 388 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 OR7G1Q8NGA0 311 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 ZPLD1Q8TCW7 415 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 TSLPQ969D9 159 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 ZDHHC12Q96GR4 267 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 LRFN5Q96NI6 719 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 DEPDC7Q96QD5 511 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 NMNAT3Q96T66 252 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 FOXQ1Q9C009 403 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 RAB33BQ9H082 229 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 NXF5Q9H1B4 397 aaKnown RBP16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 ST6GALNAC2Q9UJ37 374 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 ZNF337Q9Y3M9 751 aa16.96■□□□□ 0.31
PRPF40B-208ENST00000548436 RHPN2P1A8MT19 583 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 AGRPO00253 132 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 ELK1P19419 428 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 NAA10P41227 235 aaPredicted RBP16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 KIR2DL3P43628 341 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 OR1D5P58170 312 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 OR10A3P58181 314 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 NXPH1P58417 271 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 TRAM1Q15629 374 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 LCN1P1Q5VSP4 162 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 PRAMEF17Q5VTA0 474 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 HBMQ6B0K9 141 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 RDH10Q8IZV5 341 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 OR13C5Q8NGS8 318 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 OR6F1Q8NGZ6 308 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 ZNF524Q96C55 264 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 HSPA12BQ96MM6 686 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 FAM210AQ96ND0 272 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 DDOQ99489 341 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 CCDC86Q9H6F5 360 aaKnown RBP16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 KLHL1Q9NR64 748 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 UBQLN4Q9NRR5 601 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 NOX1Q9Y5S8 564 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 VCANP13611 3396 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 MEIOCA2RUB1 952 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 OR2B3O76000 313 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 THBS2P35442 1172 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 RPS4XP62701 263 aaKnown RBP16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 SKP2Q13309 424 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 RIN1Q13671 783 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 GGTLC2Q14390 218 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 PXKQ7Z7A4 578 aa16.95■□□□□ 0.3
PRPF40B-208ENST00000548436 ZNF440Q8IYI8 595 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms