RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 RHCGQ9UBD6 479 aa15.4■□□□□ 0.06
LIG1-204ENST00000542460 HDGFL3Q9Y3E1 203 aa15.4■□□□□ 0.06
LIG1-204ENST00000542460 ZNF407Q9C0G0 2248 aa15.4■□□□□ 0.06
LIG1-204ENST00000542460 FIGNL2A6NMB9 653 aa15.39■□□□□ 0.05
LIG1-204ENST00000542460 WDR1O75083 606 aa15.39■□□□□ 0.05
LIG1-204ENST00000542460 DIRAS1O95057 198 aa15.39■□□□□ 0.05
LIG1-204ENST00000542460 HOXD4P09016 255 aaPredicted RBP15.39■□□□□ 0.05
LIG1-204ENST00000542460 GABRA1P14867 456 aa15.39■□□□□ 0.05
LIG1-204ENST00000542460 MRPL49Q13405 166 aaKnown RBP15.39■□□□□ 0.05
LIG1-204ENST00000542460 KPNB1Q14974 876 aaKnown RBP15.39■□□□□ 0.05
LIG1-204ENST00000542460 TRAM2Q15035 370 aa15.39■□□□□ 0.05
LIG1-204ENST00000542460 CTU2Q2VPK5 515 aaKnown RBP15.39■□□□□ 0.05
LIG1-204ENST00000542460 HBMQ6B0K9 141 aa15.39■□□□□ 0.05
LIG1-204ENST00000542460 ZNF585AQ6P3V2 769 aa15.39■□□□□ 0.05
LIG1-204ENST00000542460 TTC33Q6PID6 262 aaPredicted RBP15.39■□□□□ 0.05
LIG1-204ENST00000542460 CHMP1BQ7LBR1 199 aa15.39■□□□□ 0.05
LIG1-204ENST00000542460 PAPD5Q8NDF8 572 aaKnown RBP15.39■□□□□ 0.05
LIG1-204ENST00000542460 PIK3C3Q8NEB9 887 aa15.39■□□□□ 0.05
LIG1-204ENST00000542460 OR2V1Q8NHB1 315 aa15.39■□□□□ 0.05
LIG1-204ENST00000542460 ZPLD1Q8TCW7 415 aa15.39■□□□□ 0.05
LIG1-204ENST00000542460 ARL5BQ96KC2 179 aa15.39■□□□□ 0.05
LIG1-204ENST00000542460 TMEM43Q9BTV4 400 aa15.39■□□□□ 0.05
LIG1-204ENST00000542460 ANKRD19PQ9H560 264 aa15.39■□□□□ 0.05
LIG1-204ENST00000542460 YY1AP1Q9H869 796 aa15.39■□□□□ 0.05
LIG1-204ENST00000542460 PAQR5Q9NXK6 330 aaPredicted RBP15.39■□□□□ 0.05
LIG1-204ENST00000542460 FREM3P0C091 2139 aa15.39■□□□□ 0.05
LIG1-204ENST00000542460 ZC3H12DA2A288 527 aaKnown RBP15.38■□□□□ 0.05
LIG1-204ENST00000542460 TNFSF11O14788 317 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 NPIPB7O75200 414 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 MT-ND1P03886 318 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 H1F0P07305 194 aaKnown RBP15.38■□□□□ 0.05
LIG1-204ENST00000542460 PTGER4P35408 488 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 RBM34P42696 430 aaKnown RBP15.38■□□□□ 0.05
LIG1-204ENST00000542460 EIF1AXP47813 144 aaKnown RBP15.38■□□□□ 0.05
LIG1-204ENST00000542460 CASP6P55212 293 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 CARD18P57730 90 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 SMIM11AP58511 58 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 EGR4Q05215 589 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 C1orf140Q5VVS0 124 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 WDR88Q6ZMY6 472 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 TMPPEQ6ZT21 453 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 DOLPP1Q86YN1 238 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 NKAIN4Q8IVV8 208 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 C10orf67Q8IYJ2 551 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 OR10D3Q8NH80 312 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 RELTQ969Z4 430 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 DUS3LQ96G46 650 aaKnown RBP15.38■□□□□ 0.05
LIG1-204ENST00000542460 HS6ST2Q96MM7 605 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 ZNF426Q9BUY5 554 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 SLC19A3Q9BZV2 496 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 TP63Q9H3D4 680 aaPredicted RBP15.38■□□□□ 0.05
LIG1-204ENST00000542460 TIGARQ9NQ88 270 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 MAN2C1Q9NTJ4 1040 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 SHANK1Q9Y566 2161 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 IGKV1D-42A0A075B6H8 117 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 A0A1W2PNR3 127 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 A0A1W2PRQ8 180 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 ANKRD65E5RJM6 399 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 SULT2B1O00204 365 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 DIO1P49895 249 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 CSNK2A1P68400 391 aaPredicted RBP15.38■□□□□ 0.05
LIG1-204ENST00000542460 FOXD4Q12950 439 aaPredicted RBP15.38■□□□□ 0.05
LIG1-204ENST00000542460 MYBPHQ13203 477 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 DGCR6Q14129 220 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 SGCBQ16585 318 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 OSTF1Q92882 214 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 SLCO4A1Q96BD0 722 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 DHRS1Q96LJ7 313 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 EPYCQ99645 322 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 TUBA1CQ9BQE3 449 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 DENND2DQ9H6A0 471 aaPredicted RBP15.38■□□□□ 0.05
LIG1-204ENST00000542460 COQ10BQ9H8M1 238 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 OSGIN2Q9Y236 505 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 TRAPPC4Q9Y296 219 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 TESMINQ9Y4I5 508 aa15.38■□□□□ 0.05
LIG1-204ENST00000542460 DNAJC13O75165 2243 aa15.37■□□□□ 0.05
LIG1-204ENST00000542460 OR2T1O43869 369 aa15.37■□□□□ 0.05
LIG1-204ENST00000542460 CXCL13O43927 109 aa15.37■□□□□ 0.05
LIG1-204ENST00000542460 FKBP6O75344 327 aa15.37■□□□□ 0.05
LIG1-204ENST00000542460 KRT36O76013 467 aa15.37■□□□□ 0.05
LIG1-204ENST00000542460 AHSA1O95433 338 aa15.37■□□□□ 0.05
LIG1-204ENST00000542460 PMS2P2O95744 297 aa15.37■□□□□ 0.05
LIG1-204ENST00000542460 STSP08842 583 aa15.37■□□□□ 0.05
LIG1-204ENST00000542460 GNLYP22749 145 aa15.37■□□□□ 0.05
LIG1-204ENST00000542460 ACVR2AP27037 513 aa15.37■□□□□ 0.05
LIG1-204ENST00000542460 IDUAP35475 653 aa15.37■□□□□ 0.05
LIG1-204ENST00000542460 RAC3P60763 192 aa15.37■□□□□ 0.05
LIG1-204ENST00000542460 C1QL3Q5VWW1 255 aa15.37■□□□□ 0.05
LIG1-204ENST00000542460 ADGRE4PQ86SQ3 457 aa15.37■□□□□ 0.05
LIG1-204ENST00000542460 TMEM255BQ8WV15 326 aa15.37■□□□□ 0.05
LIG1-204ENST00000542460 TMEM239Q8WW34 195 aa15.37■□□□□ 0.05
LIG1-204ENST00000542460 KTI12Q96EK9 354 aaPredicted RBP15.37■□□□□ 0.05
LIG1-204ENST00000542460 ARMC1Q9NVT9 282 aa15.37■□□□□ 0.05
LIG1-204ENST00000542460 TINAGQ9UJW2 476 aa15.37■□□□□ 0.05
LIG1-204ENST00000542460 AP4S1Q9Y587 144 aa15.37■□□□□ 0.05
LIG1-204ENST00000542460 SVILO95425 2214 aa15.36■□□□□ 0.05
LIG1-204ENST00000542460 MED12Q93074 2177 aa15.36■□□□□ 0.05
LIG1-204ENST00000542460 TRAV36DV7A0A075B6V5 113 aa15.36■□□□□ 0.05
LIG1-204ENST00000542460 TRGV8A0A0C4DH27 118 aa15.36■□□□□ 0.05
LIG1-204ENST00000542460 CLCA1A8K7I4 914 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms