RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 NRG3P56975 720 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 HSD11B2P80365 405 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 CRYZQ08257 329 aaKnown RBP9.05□□□□□ -0.96
SS18-205ENST00000542420 ELAVL1Q15717 326 aaKnown RBP9.05□□□□□ -0.96
SS18-205ENST00000542420 CARTPTQ16568 116 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 ZNF791Q3KP31 576 aaPredicted RBP9.05□□□□□ -0.96
SS18-205ENST00000542420 DMKNQ6E0U4 476 aaPredicted RBP9.05□□□□□ -0.96
SS18-205ENST00000542420 CTRB2Q6GPI1 263 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 DESI1Q6ICB0 168 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 KIRREL2Q6UWL6 708 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 FAM131AQ6UXB0 335 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 TMEM91Q6ZNR0 172 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 PXKQ7Z7A4 578 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 ZNF761Q86XN6 746 aaPredicted RBP9.05□□□□□ -0.96
SS18-205ENST00000542420 KLBQ86Z14 1044 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 SFTPA2Q8IWL1 248 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 OR8H2Q8N162 312 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 CACTIN-AS1Q8N1I8 211 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 D2HGDHQ8N465 521 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 SPEM1Q8N4L4 309 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 ASCC1Q8N9N2 400 aaKnown RBP9.05□□□□□ -0.96
SS18-205ENST00000542420 IL17RDQ8NFM7 739 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 OR14A16Q8NHC5 309 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 RPS4Y2Q8TD47 263 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 C3orf49Q96BT1 292 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 DDOQ99489 341 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 TM9SF2Q99805 663 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 NMNAT2Q9BZQ4 307 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 LAT2Q9GZY6 243 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 PPP1R3EQ9H7J1 279 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 NRIP3Q9NQ35 241 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 CUTCQ9NTM9 273 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 SOHLH2Q9NX45 425 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 KCNN3Q9UGI6 736 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 MOKQ9UQ07 419 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 HIF3AQ9Y2N7 669 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 NPFFR2Q9Y5X5 522 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 BRWD1Q9NSI6 2320 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 RHPN2P1A8MT19 583 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 DUX1O43812 170 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 EIF4E2O60573 245 aaKnown RBP9.05□□□□□ -0.96
SS18-205ENST00000542420 TRIM3O75382 744 aaPredicted RBP9.05□□□□□ -0.96
SS18-205ENST00000542420 RFPL3O75679 317 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 PIAS2O75928 621 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 NTN1O95631 604 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 PPP1R3DO95685 299 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 IGKV3-11P04433 115 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 SLC37A1P57057 533 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 CRMP1Q14194 572 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 SHFQ7M4L6 423 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 ZSCAN1Q8NBB4 408 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 GRHL3Q8TE85 626 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 SMPDL3BQ92485 455 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 LCORQ96JN0 433 aaPredicted RBP9.05□□□□□ -0.96
SS18-205ENST00000542420 DEPDC7Q96QD5 511 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 SNX18Q96RF0 628 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 TNFRSF13CQ96RJ3 184 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 CNN2Q99439 309 aaKnown RBP9.05□□□□□ -0.96
SS18-205ENST00000542420 MAU2Q9Y6X3 613 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 HEATR5AQ86XA9 2040 aa9.05□□□□□ -0.96
SS18-205ENST00000542420 CLEC2LP0C7M8 214 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 PNLIPP16233 465 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 MYL9P24844 172 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 CD79BP40259 229 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 TGM4P49221 684 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 CENPAP49450 140 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 DIO1P49895 249 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 ZNF85Q03923 595 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 SQSTM1Q13501 440 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 BAIAP2L2Q6UXY1 529 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 KCTD20Q7Z5Y7 419 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 ATG4DQ86TL0 474 aaPredicted RBP9.04□□□□□ -0.96
SS18-205ENST00000542420 LRRC28Q86X40 367 aaPredicted RBP9.04□□□□□ -0.96
SS18-205ENST00000542420 RAB43Q86YS6 212 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 UBQLNLQ8IYU4 475 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 RDH10Q8IZV5 341 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 TMEM99Q8N816 258 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 TTC9Q92623 222 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 HTRA1Q92743 480 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 TMEM203Q969S6 136 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 SLC41A2Q96JW4 573 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 GAS2L1Q99501 681 aaPredicted RBP9.04□□□□□ -0.96
SS18-205ENST00000542420 ZCCHC4Q9H5U6 513 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 MUTYHQ9UIF7 546 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 YARS2Q9Y2Z4 477 aaKnown RBP9.04□□□□□ -0.96
SS18-205ENST00000542420 TRAV27A0A087WT01 109 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 IGHV5-51A0A0C4DH38 117 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 FAM183AA6NL82 134 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 C17orf105B2RV13 164 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 SCDO00767 359 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 APOL3O95236 402 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 CYC1P08574 325 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 FUT1P19526 365 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 NOS3P29474 1203 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 GBX2P52951 348 aaPredicted RBP9.04□□□□□ -0.96
SS18-205ENST00000542420 BTG2P78543 158 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 SKP2Q13309 424 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 SLC35F1Q5T1Q4 408 aa9.04□□□□□ -0.96
SS18-205ENST00000542420 RPL22L1Q6P5R6 122 aaKnown RBP9.04□□□□□ -0.96
SS18-205ENST00000542420 WDR74Q6RFH5 385 aaPredicted RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms