RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 MYBPC1Q00872 1141 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 LIPEQ05469 1076 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 LRRC63Q05C16 580 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 SRSF9Q13242 221 aaKnown RBP eCLIP2.76□□□□□ -1.97
USP28-210ENST00000542033 TFDP1Q14186 410 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 SLC15A2Q16348 729 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 EXT1Q16394 746 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 KCTD21Q4G0X4 260 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 LDLRAP1Q5SW96 308 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 LIPNQ5VXI9 398 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 RFWD3Q6PCD5 774 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 FAM159AQ6UWV7 190 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 BHLHA15Q7RTS1 189 aaPredicted RBP2.76□□□□□ -1.97
USP28-210ENST00000542033 TRMT11Q7Z4G4 463 aaKnown RBP2.76□□□□□ -1.97
USP28-210ENST00000542033 LUZP2Q86TE4 346 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 NT5DC3Q86UY8 548 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 FAM131BQ86XD5 332 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 CERS5Q8N5B7 392 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 LRRC17Q8N6Y2 441 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 BCORP1Q8N888 145 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 COLGALT1Q8NBJ5 622 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 OR6M1Q8NGM8 313 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 OR13C5Q8NGS8 318 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 OR13C2Q8NGS9 318 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 ZNF671Q8TAW3 534 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 ZNF519Q8TB69 540 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 MAGEE2Q8TD90 523 aaPredicted RBP2.76□□□□□ -1.97
USP28-210ENST00000542033 DTX3LQ8TDB6 740 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 GATAD1Q8WUU5 269 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 SELENOMQ8WWX9 145 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 OR1E3Q8WZA6 343 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 ESR2Q92731 530 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 THRSPQ92748 146 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 STMN2Q93045 179 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 TESCQ96BS2 214 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 RAB39BQ96DA2 213 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 BPIFA2Q96DR5 249 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 SERAC1Q96JX3 654 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 RILPQ96NA2 401 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 ZNF317Q96PQ6 595 aaPredicted RBP2.76□□□□□ -1.97
USP28-210ENST00000542033 TGS1Q96RS0 853 aaKnown RBP2.76□□□□□ -1.97
USP28-210ENST00000542033 PIGQQ9BRB3 760 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 SYT11Q9BT88 431 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 C1orf50Q9BV19 199 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 FGFBP2Q9BYJ0 223 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 MTIF3Q9H2K0 278 aaKnown RBP2.76□□□□□ -1.97
USP28-210ENST00000542033 ASB8Q9H765 288 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 EXO5Q9H790 373 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 COG4Q9H9E3 785 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 ROPN1Q9HAT0 212 aaPredicted RBP2.76□□□□□ -1.97
USP28-210ENST00000542033 ASCL3Q9NQ33 180 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 SPHK2Q9NRA0 654 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 THUMPD1Q9NXG2 353 aaKnown RBP2.76□□□□□ -1.97
USP28-210ENST00000542033 KLHL28Q9NXS3 571 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 NKIRAS1Q9NYS0 192 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 MAT2BQ9NZL9 334 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 CCDC59Q9P031 241 aaKnown RBP2.76□□□□□ -1.97
USP28-210ENST00000542033 RNF14Q9UBS8 474 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 IL20RAQ9UHF4 553 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 PLCL2Q9UPR0 1127 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 PUS1Q9Y606 427 aaKnown RBP eCLIP2.76□□□□□ -1.97
USP28-210ENST00000542033 SAR1BQ9Y6B6 198 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 SELENOKQ9Y6D0 94 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 PRSS21Q9Y6M0 314 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 ZHX2Q9Y6X8 837 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 EFCAB6Q5THR3 1501 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 DENND4BO75064 1496 aaPredicted RBP2.76□□□□□ -1.97
USP28-210ENST00000542033 ADGRL2O95490 1459 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 ATP7BP35670 1465 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 C9orf84Q5VXU9 1444 aa2.76□□□□□ -1.97
USP28-210ENST00000542033 KDM5AP29375 1690 aaKnown RBP2.76□□□□□ -1.97
USP28-210ENST00000542033 DNMT1P26358 1616 aaKnown RBP2.75□□□□□ -1.97
USP28-210ENST00000542033 NID2Q14112 1375 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 CHD2O14647 1828 aaKnown RBP2.75□□□□□ -1.97
USP28-210ENST00000542033 A0A0J9YYE9 177 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 SERTM2A0A1B0GWG4 89 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 GNG14A0A1W2PPG7 69 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 FAM230AA0A1W2PPH8 454 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 A0A1W2PR80 420 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 FAM92AA1XBS5 289 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 BCLAF3A2AJT9 711 aaKnown RBP2.75□□□□□ -1.97
USP28-210ENST00000542033 TMEM89A2RUT3 159 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 LINC00862A6NCI5 91 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 NKX6-3A6NJ46 265 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 METTL15A6NJ78 407 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 SMIM23A6NLE4 172 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 H7C423 109 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 M0QZK8 103 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 CCSO14618 274 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 ARPC1BO15143 372 aaKnown RBP2.75□□□□□ -1.97
USP28-210ENST00000542033 DCXO43602 365 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 JAK2O60674 1132 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 FKBP6O75344 327 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 CTAG2O75638 210 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 GPX5O75715 221 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 MFN2O95140 757 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 IFNA10P01566 189 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 IFNGP01579 166 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 TRBC1P01850 177 aa2.75□□□□□ -1.97
USP28-210ENST00000542033 IGHEP01854 428 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms