RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 RNF113BQ8IZP6 322 aaKnown RBP15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 OFCC1Q8IZS5 231 aa15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 PRR7Q8TB68 274 aa15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 RNF217Q8TC41 542 aa15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 SMPDL3BQ92485 455 aa15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 SLC41A3Q96GZ6 507 aa15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 GP6Q9HCN6 339 aa15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 PNPLA3Q9NST1 481 aa15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 ALKBH4Q9NXW9 302 aa15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 GMPR2Q9P2T1 348 aaKnown RBP15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 SLC7A8Q9UHI5 535 aa15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 RIMS3Q9UJD0 308 aa15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 SLC5A6Q9Y289 635 aa15.76■□□□□ 0.11
CLSTN3-210ENST00000540931 SPTBN1Q01082 2364 aaKnown RBP15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 CPSF4LA6NMK7 179 aaKnown RBP15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 TMEM229AB2RXF0 380 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 SULT2B1O00204 365 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 SEC14L5O43304 696 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 KRT36O76013 467 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 IL2RAP01589 272 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 CRHP06850 196 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 RAP2AP10114 183 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 GNLYP22749 145 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 SFTPDP35247 375 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 IDUAP35475 653 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 EIF1AXP47813 144 aaKnown RBP15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 OR1E2P47887 323 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 STARP49675 285 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 SMSP52788 366 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 CLDN15P56746 228 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 MS4A2Q01362 244 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 SRYQ05066 204 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 TRAM2Q15035 370 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 ZSCAN26Q16670 478 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 C1orf146Q5VVC0 180 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 POMZP3Q6PJE2 187 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 CYP2R1Q6VVX0 501 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 RPTNQ6XPR3 784 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 RRM2BQ7LG56 351 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 ADGRE4PQ86SQ3 457 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 GGNQ86UU5 652 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 ZGRF1Q86YA3 2104 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 UBQLNLQ8IYU4 475 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 LINC00471Q8N535 108 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 PIK3C3Q8NEB9 887 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 OR5M1Q8NGP8 315 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 OSTF1Q92882 214 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 CLPTM1LQ96KA5 538 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 PSMG3-AS1Q96PY0 264 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 OR5B2Q96R09 309 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 ZNF300Q96RE9 604 aaPredicted RBP15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 NAA11Q9BSU3 229 aaPredicted RBP15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 PRRG4Q9BZD6 226 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 AMBRA1Q9C0C7 1298 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 MEMO1Q9Y316 297 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 POLEQ07864 2286 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 PCNX3Q9H6A9 2034 aa15.75■□□□□ 0.11
CLSTN3-210ENST00000540931 TRAV36DV7A0A075B6V5 113 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 HSPB2A8KAH6 182 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 CCL21O00585 134 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 MT-ATP6P00846 226 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 GTF2E2P29084 291 aaKnown RBP15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 CDH12P55289 794 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 HOXC5Q00444 222 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 MRPL49Q13405 166 aaKnown RBP15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 RNPS1Q15287 305 aaKnown RBP15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 TAF11Q15544 211 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 HSPB2Q16082 182 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 C3AR1Q16581 482 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 ACSF3Q4G176 576 aaPredicted RBP15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 EMC4Q5J8M3 183 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 FAM69AQ5T7M9 428 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 RIPPLY2Q5TAB7 128 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 C1orf140Q5VVS0 124 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 LINC00114Q6XXX2 140 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 P4HA3Q7Z4N8 544 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 COMTD1Q86VU5 262 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 CDK20Q8IZL9 346 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 OR5M9Q8NGP3 310 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 OR10D3Q8NH80 312 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 MFSD8Q8NHS3 518 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 RND1Q92730 232 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 ADGRG7Q96K78 797 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 RSPO3Q9BXY4 272 aaPredicted RBP15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 COQ3Q9NZJ6 369 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 SLC7A7Q9UM01 511 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 CORINQ9Y5Q5 1042 aa15.74■□□□□ 0.11
CLSTN3-210ENST00000540931 ESPL1Q14674 2120 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 A0A0J9YW62 118 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 A0A1W2PRQ8 180 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 DHRS12A0PJE2 317 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 TMEM72A0PK05 275 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 MBD3L4A6NDZ8 208 aaPredicted RBP15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 MBD3L3A6NE82 208 aaPredicted RBP15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 MBD3L5A6NJ08 208 aaPredicted RBP15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 SLC22A20A6NK97 555 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 CLCA1A8K7I4 914 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 SHISA8B8ZZ34 492 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 TNFSF11O14788 317 aa15.73■□□□□ 0.11
CLSTN3-210ENST00000540931 EFNA2O43921 213 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms