RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 TIMD4Q96H15 378 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 OR5B2Q96R09 309 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 MRI1Q9BV20 369 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 SERINC1Q9NRX5 453 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 PLCE1Q9P212 2302 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 ICAM5Q9UMF0 924 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 AUP1Q9Y679 476 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 A0A1W2PNR3 127 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 FAM181BA6NEQ2 426 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 KLF11O14901 512 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 DHHO43323 396 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 NME6O75414 186 aaPredicted RBP7.88□□□□□ -1.15
USP28-205ENST00000537706 INHBAP08476 426 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 RAD52P43351 418 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 EVX1P49640 407 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 SUMO3P55854 103 aaPredicted RBP7.88□□□□□ -1.15
USP28-205ENST00000537706 WDR4P57081 412 aaKnown RBP7.88□□□□□ -1.15
USP28-205ENST00000537706 STEAP4Q687X5 459 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 CNPY4Q8N129 248 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 C4orf33Q8N1A6 199 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 METTL4Q8N3J2 472 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 OR52E4Q8NGH9 312 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 UBTD2Q8WUN7 234 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 MRGPRX4Q96LA9 322 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 ZNF48Q96MX3 618 aaPredicted RBP7.88□□□□□ -1.15
USP28-205ENST00000537706 FGFR1OP2Q9NVK5 253 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 NMRK1Q9NWW6 199 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 ASH2LQ9UBL3 628 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 CMYA5Q8N3K9 4069 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 A0A087WV62 115 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 OR6C65A6NJZ3 312 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 TM9SF1O15321 606 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 SNX3O60493 162 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 SPAG7O75391 227 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 FOXH1O75593 365 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 CLPXO76031 633 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 OXSR1O95747 527 aaPredicted RBP7.87□□□□□ -1.15
USP28-205ENST00000537706 HPXP02790 462 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 KRT4P19013 534 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 LCN1P31025 176 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 TAS2R39P59534 338 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 MVKQ03426 396 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 IFT88Q13099 833 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 ABLIM2Q6H8Q1 611 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 C3orf33Q6P1S2 294 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 APOOLQ6UXV4 268 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 CCDC121Q6ZUS5 278 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 MTDHQ86UE4 582 aaKnown RBP7.87□□□□□ -1.15
USP28-205ENST00000537706 WDFY1Q8IWB7 410 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 BCL6BQ8N143 479 aaPredicted RBP7.87□□□□□ -1.15
USP28-205ENST00000537706 GLB1L3Q8NCI6 653 aaPredicted RBP7.87□□□□□ -1.15
USP28-205ENST00000537706 STAG3L4Q8TBR4 150 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 EXOSC8Q96B26 276 aaKnown RBP7.87□□□□□ -1.15
USP28-205ENST00000537706 TM4SF18Q96CE8 201 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 APOPT1Q96IL0 206 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 DDX18Q9NVP1 670 aaKnown RBP7.87□□□□□ -1.15
USP28-205ENST00000537706 TMEM45AQ9NWC5 275 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 AURKAIP1Q9NWT8 199 aaPredicted RBP7.87□□□□□ -1.15
USP28-205ENST00000537706 ZNF346Q9UL40 294 aaKnown RBP7.87□□□□□ -1.15
USP28-205ENST00000537706 SLC9A8Q9Y2E8 581 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 ACOT9Q9Y305 439 aa7.87□□□□□ -1.15
USP28-205ENST00000537706 PPIAL4EA0A075B759 164 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 PPIAL4CA0A0B4J2A2 164 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 A0A1W2PPM1 405 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 TMEM129A0AVI4 362 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 FAM159BA6NKW6 160 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 PPIAL4DF5H284 164 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 C3orf84H3BNL1 204 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 SULT2B1O00204 365 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 KRT33AO76009 404 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 IGHV2-5P01817 119 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 OPN1MWP04001 364 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 PPIAL4FP0DN26 164 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 OPN1MW2P0DN77 364 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 OPN1MW3P0DN78 364 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 TAC1P20366 129 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 GABRA3P34903 492 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 MAGEA8P43361 318 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 PRIM2P49643 509 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 RPL15P61313 204 aaKnown RBP7.86□□□□□ -1.15
USP28-205ENST00000537706 NAB1Q13506 487 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 DAG1Q14118 895 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 VPS26BQ4G0F5 336 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 FAM180BQ6P0A1 224 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 ANKRD16Q6P6B7 361 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 FIP1L1Q6UN15 594 aaKnown RBP7.86□□□□□ -1.15
USP28-205ENST00000537706 CYS1Q717R9 158 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 COMMD6Q7Z4G1 85 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 WDR20Q8TBZ3 569 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 RAB1CQ92928 201 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 MRRFQ96E11 262 aaKnown RBP7.86□□□□□ -1.15
USP28-205ENST00000537706 GATA5Q9BWX5 397 aaPredicted RBP7.86□□□□□ -1.15
USP28-205ENST00000537706 MRPL1Q9BYD6 325 aaKnown RBP7.86□□□□□ -1.15
USP28-205ENST00000537706 ZNF385DQ9H6B1 395 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 MKS1Q9NXB0 559 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 NSMCE4AQ9NXX6 385 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 C1RLQ9NZP8 487 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 NOX1Q9Y5S8 564 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 H3BNH8 94 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 PDLIM1O00151 329 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms