RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 RAB42Q8N4Z0 105 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 OR52E1Q8NGJ3 308 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 NR4A3Q92570 626 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 GCDHQ92947 438 aaPredicted RBP12.93□□□□□ -0.34
LIG1-203ENST00000536218 TM4SF18Q96CE8 201 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 ARHGAP9Q9BRR9 750 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 CHST8Q9H2A9 424 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 EXOSC3Q9NQT5 275 aaKnown RBP12.93□□□□□ -0.34
LIG1-203ENST00000536218 ZNF275Q9NSD4 429 aaPredicted RBP12.93□□□□□ -0.34
LIG1-203ENST00000536218 DHCR7Q9UBM7 475 aaKnown RBP12.93□□□□□ -0.34
LIG1-203ENST00000536218 GHRLQ9UBU3 117 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 TESQ9UGI8 421 aaKnown RBP12.93□□□□□ -0.34
LIG1-203ENST00000536218 CORO2BQ9UQ03 480 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 PLXND1Q9Y4D7 1925 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 LRIT2A6NDA9 550 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 CACNB4O00305 520 aaPredicted RBP12.93□□□□□ -0.34
LIG1-203ENST00000536218 KLK3P07288 261 aaPredicted RBP12.93□□□□□ -0.34
LIG1-203ENST00000536218 MTNR1AP48039 350 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 PGDP52209 483 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 EPHA4P54764 986 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 RAP2BP61225 183 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 UBE2IP63279 158 aaKnown RBP12.93□□□□□ -0.34
LIG1-203ENST00000536218 CDK6Q00534 326 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 ENPP2Q13822 863 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 ARHGAP19Q14CB8 494 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 ZNF770Q6IQ21 691 aaPredicted RBP12.93□□□□□ -0.34
LIG1-203ENST00000536218 SVBPQ8N300 66 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 OR52N2Q8NGI0 321 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 CCL4L1Q8NHW4 92 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 RXFP4Q8TDU9 374 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 TSACCQ96A04 125 aaPredicted RBP12.93□□□□□ -0.34
LIG1-203ENST00000536218 KLHL31Q9H511 634 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 AUNIPQ9H7T9 357 aa12.93□□□□□ -0.34
LIG1-203ENST00000536218 IGKV1-8A0A0C4DH67 115 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 TMEM129A0AVI4 362 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 A8MVJ9 347 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 WRBO00258 174 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 FFAR1O14842 300 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 CDC123O75794 336 aaPredicted RBP12.92□□□□□ -0.34
LIG1-203ENST00000536218 ANXA7P20073 488 aaKnown RBP12.92□□□□□ -0.34
LIG1-203ENST00000536218 PRKAR1BP31321 381 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 CTHP32929 405 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 BSGP35613 385 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 SSR2P43308 183 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 LIMS1P48059 325 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 RAB28P51157 221 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 LIM2P55344 173 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 PDE7AQ13946 482 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 HBMQ6B0K9 141 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 KIAA1161Q6NSJ0 714 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 TRIM40Q6P9F5 258 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 CD200R1LQ6Q8B3 271 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 ARIH2OSQ8N7S6 290 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 OR4E2Q8NGC2 313 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 OR2A1Q8NGT9 310 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 THAP4Q8WY91 577 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 SLC25A28Q96A46 364 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 CXorf40BQ96DE9 158 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 MS4A4EQ96PG1 132 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 RCE1Q9Y256 329 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 ATG2AQ2TAZ0 1938 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 SDK1Q7Z5N4 2213 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 A0A1W2PQF6 199 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 SLC9B1P1A6NJY1 282 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 NDUFS4O43181 175 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 UCHL1P09936 223 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 NPR2P20594 1047 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 PAICSP22234 425 aaKnown RBP12.92□□□□□ -0.34
LIG1-203ENST00000536218 ACHEP22303 614 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 PRDX1Q06830 199 aaKnown RBP12.92□□□□□ -0.34
LIG1-203ENST00000536218 AKIRIN2Q53H80 203 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 RPS26P11Q5JNZ5 115 aaPredicted RBP12.92□□□□□ -0.34
LIG1-203ENST00000536218 IKBIPQ70UQ0 350 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 FRMD1Q8N878 549 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 KAT2AQ92830 837 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 OR1F2PQ96R84 312 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 UBL7Q96S82 380 aaPredicted RBP12.92□□□□□ -0.34
LIG1-203ENST00000536218 GAS2L1Q99501 681 aaPredicted RBP12.92□□□□□ -0.34
LIG1-203ENST00000536218 IFT27Q9BW83 186 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 SYNDIG1Q9H7V2 258 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 C1GALT1Q9NS00 363 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 MBD2Q9UBB5 411 aa12.92□□□□□ -0.34
LIG1-203ENST00000536218 OR6C65A6NJZ3 312 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 PGRMC2O15173 223 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 ERAL1O75616 437 aaKnown RBP12.91□□□□□ -0.34
LIG1-203ENST00000536218 EML2O95834 649 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 GIPP09681 153 aaPredicted RBP12.91□□□□□ -0.34
LIG1-203ENST00000536218 RPL3P39023 403 aaKnown RBP12.91□□□□□ -0.34
LIG1-203ENST00000536218 HMGA2P52926 109 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 PRKAG1P54619 331 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 E2F1Q01094 437 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 PDZK1IP1Q13113 114 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 RNLSQ5VYX0 342 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 SPRYD4Q8WW59 207 aaPredicted RBP12.91□□□□□ -0.34
LIG1-203ENST00000536218 S1PR5Q9H228 398 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 DDX31Q9H8H2 851 aaKnown RBP12.91□□□□□ -0.34
LIG1-203ENST00000536218 MRPS30Q9NP92 439 aaKnown RBP12.91□□□□□ -0.34
LIG1-203ENST00000536218 AP1M2Q9Y6Q5 423 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 DSPPQ9NZW4 1301 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 KIAA1549LQ6ZVL6 1849 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms