RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 FAM199XQ6PEV8 388 aaPredicted RBP1.93□□□□□ -2.1
CD44-238ENST00000534296 CASC1Q6TDU7 716 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 RNF165Q6ZSG1 346 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 ACOT7LQ6ZUV0 252 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 NLRP9Q7RTR0 991 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 PLA2G4DQ86XP0 818 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 TMEM123Q8N131 208 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 LINC01561Q8N1V8 128 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 CCDC71LQ8N9Z2 235 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 FNDC5Q8NAU1 212 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 IPMKQ8NFU5 416 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 OR4D5Q8NGN0 318 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 FANK1Q8TC84 345 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 OR1E3Q8WZA6 343 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 PIGCQ92535 297 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 OSTF1Q92882 214 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 ZNF799Q96GE5 643 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 IMMP1LQ96LU5 166 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 COPS8Q99627 209 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 CAPS2Q9BXY5 557 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 SELENOIQ9C0D9 397 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 MAGT1Q9H0U3 335 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 RHBGQ9H310 441 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 VCX2Q9H322 139 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 REEP4Q9H6H4 257 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 ZNF702PQ9H963 129 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 MEAF6Q9HAF1 191 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 POPDC2Q9HBU9 364 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 UFSP2Q9NUQ7 469 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 IL36GQ9NZH8 169 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 PIPOXQ9P0Z9 390 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 ONECUT1Q9UBC0 465 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 RPS6KB2Q9UBS0 482 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 CDH9Q9ULB4 789 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 CA5BQ9Y2D0 317 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 V9GY05 133 aa1.93□□□□□ -2.1
CD44-238ENST00000534296 ATP10DQ9P241 1426 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 IDSB3KWA1 339 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 K7ENP7 123 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 EFNA2O43921 213 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 TOM1O60784 492 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 SPAG6O75602 509 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 ERLIN2O94905 339 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 OXSR1O95747 527 aaPredicted RBP1.92□□□□□ -2.1
CD44-238ENST00000534296 IGLV1-47P01700 117 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 HPNP05981 417 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 CPN1P15169 458 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 COX5AP20674 150 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 PAX7P23759 505 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 CMA1P23946 247 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 LAP3P28838 519 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 CD1BP29016 333 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 GLP1RP43220 463 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 STARP49675 285 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 CAV2P51636 162 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 ZNF133P52736 654 aaPredicted RBP1.92□□□□□ -2.1
CD44-238ENST00000534296 MICBQ29980 383 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 SLC25A52Q3SY17 297 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 TMEM52BQ4KMG9 183 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 DMRTC1Q5HYR2 192 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 FAM120AOSQ5T036 256 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 SPATA46Q5T0L3 261 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 MARCH8Q5T0T0 291 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 ZSCAN25Q6NSZ9 544 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 CXCL17Q6UXB2 119 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 PGAP1Q75T13 922 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 TGIF2LYQ8IUE0 185 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 SVOPLQ8N434 492 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 ACOT4Q8N9L9 421 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 OR4D9Q8NGE8 314 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 OR52I1Q8NGK6 324 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 OR1F12Q8NHA8 337 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 FAM151AQ8WW52 585 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 ARNTL2Q8WYA1 636 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 FAM3CQ92520 227 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 NUS1Q96E22 293 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 TCEANC2Q96MN5 208 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 NIPSNAP3BQ9BS92 247 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 CRACR2AQ9BSW2 395 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 ACTR6Q9GZN1 396 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 ROGDIQ9GZN7 287 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 GLIPR2Q9H4G4 154 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 AZI2Q9H6S1 392 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 VCPKMTQ9H867 229 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 FOLH1BQ9HBA9 442 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 MRPL47Q9HD33 250 aaKnown RBP1.92□□□□□ -2.1
CD44-238ENST00000534296 POLE4Q9NR33 117 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 AIG1Q9NVV5 245 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 TMEM9Q9P0T7 183 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 SEC14L3Q9UDX4 400 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 CHRNA9Q9UGM1 479 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 ANGPTL2Q9UKU9 493 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 CLEC4AQ9UMR7 237 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 RASD1Q9Y272 281 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 IKBKGQ9Y6K9 419 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 CDH10Q9Y6N8 788 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 KANK1Q14678 1352 aa1.92□□□□□ -2.1
CD44-238ENST00000534296 RPAP1Q9BWH6 1393 aaPredicted RBP1.92□□□□□ -2.1
CD44-238ENST00000534296 SH3TC1Q8TE82 1336 aa1.91□□□□□ -2.1
CD44-238ENST00000534296 PLEKHG1Q9ULL1 1385 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms