RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 ABHD3Q8WU67 409 aa17.73■□□□□ 0.43
CPSF1-209ENST00000532725 DDIT4LQ96D03 193 aa17.73■□□□□ 0.43
CPSF1-209ENST00000532725 LRRC37BQ96QE4 947 aa17.73■□□□□ 0.43
CPSF1-209ENST00000532725 POTEKPQ9BYX7 375 aa17.73■□□□□ 0.43
CPSF1-209ENST00000532725 EVA1AQ9H8M9 152 aa17.73■□□□□ 0.43
CPSF1-209ENST00000532725 PLSCR4Q9NRQ2 329 aa17.73■□□□□ 0.43
CPSF1-209ENST00000532725 ITPR2Q14571 2701 aa17.73■□□□□ 0.43
CPSF1-209ENST00000532725 IGHV3-15A0A0B4J1V0 119 aa17.72■□□□□ 0.43
CPSF1-209ENST00000532725 FAM220BPB1ANY3 271 aa17.72■□□□□ 0.43
CPSF1-209ENST00000532725 SMAD9O15198 467 aaKnown RBP17.72■□□□□ 0.43
CPSF1-209ENST00000532725 SHOX2O60902 331 aaPredicted RBP17.72■□□□□ 0.43
CPSF1-209ENST00000532725 FAM107AO95990 144 aa17.72■□□□□ 0.43
CPSF1-209ENST00000532725 PLGP00747 810 aaPredicted RBP17.72■□□□□ 0.43
CPSF1-209ENST00000532725 CD8BP10966 210 aa17.72■□□□□ 0.43
CPSF1-209ENST00000532725 CD247P20963 164 aa17.72■□□□□ 0.43
CPSF1-209ENST00000532725 UQCRC1P31930 480 aa17.72■□□□□ 0.43
CPSF1-209ENST00000532725 SIRPAP78324 504 aa17.72■□□□□ 0.43
CPSF1-209ENST00000532725 BNIP2Q12982 314 aa17.72■□□□□ 0.43
CPSF1-209ENST00000532725 RNPS1Q15287 305 aaKnown RBP17.72■□□□□ 0.43
CPSF1-209ENST00000532725 ZNF295-AS1Q8N0V1 137 aa17.72■□□□□ 0.43
CPSF1-209ENST00000532725 LRRC46Q96FV0 321 aa17.72■□□□□ 0.43
CPSF1-209ENST00000532725 ARHGDIGQ99819 225 aa17.72■□□□□ 0.43
CPSF1-209ENST00000532725 TRIM2Q9C040 744 aa17.72■□□□□ 0.43
CPSF1-209ENST00000532725 GP6Q9HCN6 339 aa17.72■□□□□ 0.43
CPSF1-209ENST00000532725 KLHL28Q9NXS3 571 aa17.72■□□□□ 0.43
CPSF1-209ENST00000532725 TMEM181Q9P2C4 612 aa17.72■□□□□ 0.43
CPSF1-209ENST00000532725 GMPR2Q9P2T1 348 aaKnown RBP17.72■□□□□ 0.43
CPSF1-209ENST00000532725 ING1Q9UK53 422 aaPredicted RBP17.72■□□□□ 0.43
CPSF1-209ENST00000532725 NOTCH2Q04721 2471 aa17.71■□□□□ 0.43
CPSF1-209ENST00000532725 DCTN3O75935 186 aa17.71■□□□□ 0.43
CPSF1-209ENST00000532725 IMPDH2P12268 514 aa17.71■□□□□ 0.43
CPSF1-209ENST00000532725 PRF1P14222 555 aa17.71■□□□□ 0.43
CPSF1-209ENST00000532725 NUDT2P50583 147 aa17.71■□□□□ 0.43
CPSF1-209ENST00000532725 CTBP2P56545 445 aa17.71■□□□□ 0.43
CPSF1-209ENST00000532725 H3F3AP84243 136 aa17.71■□□□□ 0.43
CPSF1-209ENST00000532725 SNTB1Q13884 538 aaKnown RBP17.71■□□□□ 0.43
CPSF1-209ENST00000532725 NRF1Q16656 503 aa17.71■□□□□ 0.43
CPSF1-209ENST00000532725 ZNF474Q6S9Z5 364 aaPredicted RBP17.71■□□□□ 0.43
CPSF1-209ENST00000532725 MCEMP1Q8IX19 187 aa17.71■□□□□ 0.43
CPSF1-209ENST00000532725 TUSC5Q8IXB3 177 aa17.71■□□□□ 0.43
CPSF1-209ENST00000532725 ZNF610Q8N9Z0 462 aa17.71■□□□□ 0.43
CPSF1-209ENST00000532725 OR2T12Q8NG77 320 aa17.71■□□□□ 0.43
CPSF1-209ENST00000532725 OR52E4Q8NGH9 312 aa17.71■□□□□ 0.43
CPSF1-209ENST00000532725 OR6K3Q8NGY3 331 aa17.71■□□□□ 0.43
CPSF1-209ENST00000532725 DNAJA3Q96EY1 480 aa17.71■□□□□ 0.43
CPSF1-209ENST00000532725 ZNF559Q9BR84 538 aa17.71■□□□□ 0.43
CPSF1-209ENST00000532725 RBM24Q9BX46 236 aaKnown RBP17.71■□□□□ 0.43
CPSF1-209ENST00000532725 OPN3Q9H1Y3 402 aaPredicted RBP17.71■□□□□ 0.43
CPSF1-209ENST00000532725 C12orf10Q9HB07 376 aa17.71■□□□□ 0.43
CPSF1-209ENST00000532725 SLC13A4Q9UKG4 626 aa17.71■□□□□ 0.43
CPSF1-209ENST00000532725 EMC9Q9Y3B6 208 aa17.71■□□□□ 0.43
CPSF1-209ENST00000532725 A0A1B0GWA3 101 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 ELOVL7A1L3X0 281 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 A8MVM7 634 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 TMEM229AB2RXF0 380 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 NME4O00746 187 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 DNPH1O43598 174 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 CYTIPO60759 359 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 NPIPB7O75200 414 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 SMNDC1O75940 238 aaKnown RBP eCLIP17.7■□□□□ 0.42
CPSF1-209ENST00000532725 FESP07332 822 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 YES1P07947 543 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 SLC7A2P52569 658 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 RGS8P57771 180 aaPredicted RBP17.7■□□□□ 0.42
CPSF1-209ENST00000532725 LIPEQ05469 1076 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 OR1Q1Q15612 314 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 FAM91A1Q658Y4 838 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 C6orf89Q6UWU4 347 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 MICU2Q8IYU8 434 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 OR4D11Q8NGI4 311 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 SLC26A7Q8TE54 656 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 DNAJA4Q8WW22 397 aaPredicted RBP17.7■□□□□ 0.42
CPSF1-209ENST00000532725 PSD2Q9BQI7 771 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 BCO1Q9HAY6 547 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 ARL8BQ9NVJ2 186 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 TESQ9UGI8 421 aaKnown RBP17.7■□□□□ 0.42
CPSF1-209ENST00000532725 PROCRQ9UNN8 238 aa17.7■□□□□ 0.42
CPSF1-209ENST00000532725 DCHS2Q6V1P9 2916 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 M0R3H8 397 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 AGTR1P30556 359 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 KDELR2P33947 212 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 PEX19P40855 299 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 PCYT1AP49585 367 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 OR2B6P58173 313 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 PSME3P61289 254 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 SLC35A1P78382 337 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 EGR4Q05215 589 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 RASGEF1BQ0VAM2 473 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 NPTX1Q15818 432 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 GKAP1Q5VSY0 366 aaPredicted RBP17.69■□□□□ 0.42
CPSF1-209ENST00000532725 ULK3Q6PHR2 472 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 KIF18BQ86Y91 864 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 OR6T1Q8NGN1 323 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 STK35Q8TDR2 534 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 RASSF5Q8WWW0 418 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 TMEM27Q9HBJ8 222 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 GALNT8Q9NY28 637 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 KLHL13Q9P2N7 655 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 RPS6KB2Q9UBS0 482 aa17.69■□□□□ 0.42
CPSF1-209ENST00000532725 LIPT2A6NK58 231 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms