RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 SPOCK1Q08629 439 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 STX3Q13277 289 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 DPY19L1Q2PZI1 675 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 SPANXN4Q5MJ08 99 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 OR7E24Q6IFN5 339 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 KLHL17Q6TDP4 642 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 CCDC103Q8IW40 242 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 CMIPQ8IY22 773 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 LRRC34Q8IZ02 419 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 PIAS4Q8N2W9 510 aaPredicted RBP9.98□□□□□ -0.81
VPS28-214ENST00000531032 ARFGAP2Q8N6H7 521 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 VPS37AQ8NEZ2 397 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 OR10H5Q8NGA6 315 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 MGARPQ8TDB4 240 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 ADAD1Q96M93 576 aaKnown RBP9.98□□□□□ -0.81
VPS28-214ENST00000531032 MUS81Q96NY9 551 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 SLC35A5Q9BS91 424 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 RHNO1Q9BSD3 238 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 CACNG6Q9BXT2 260 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 AMBRA1Q9C0C7 1298 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.98□□□□□ -0.81
VPS28-214ENST00000531032 CBLN4Q9NTU7 201 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 TMEM181Q9P2C4 612 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 HAO1Q9UJM8 370 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 TRAPPC4Q9Y296 219 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.98□□□□□ -0.81
VPS28-214ENST00000531032 RAP2CQ9Y3L5 183 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 IGHV4-30-2A0A087WSY4 118 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 A0A1W2PR80 420 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 AGAP5A6NIR3 686 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 E9PBE3 544 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 HMGN4O00479 90 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 FAAHO00519 579 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 ZNF208O43345 1280 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 CPSF4O95639 269 aaKnown RBP9.97□□□□□ -0.81
VPS28-214ENST00000531032 CHI3L1P36222 383 aaPredicted RBP9.97□□□□□ -0.81
VPS28-214ENST00000531032 MAGEA8P43361 318 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 HTR3AP46098 478 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 IDH2P48735 452 aaKnown RBP9.97□□□□□ -0.81
VPS28-214ENST00000531032 RPL14P50914 215 aaKnown RBP9.97□□□□□ -0.81
VPS28-214ENST00000531032 CLNS1AP54105 237 aaKnown RBP9.97□□□□□ -0.81
VPS28-214ENST00000531032 FOXG1P55316 489 aaPredicted RBP9.97□□□□□ -0.81
VPS28-214ENST00000531032 DSCR9P59020 149 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 CHRNEQ04844 493 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 GABRA6Q16445 453 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 FAM174BQ3ZCQ3 159 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 GPAT3Q53EU6 434 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 HMBOX1Q6NT76 420 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 ZNF544Q6NX49 715 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 SLC22A25Q6T423 547 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 B3GLCTQ6Y288 498 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 HMGN2P46Q86SG4 172 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 MUC15Q8N387 334 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 C17orf78Q8N4C9 275 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 C1orf162Q8NEQ5 155 aaPredicted RBP9.97□□□□□ -0.81
VPS28-214ENST00000531032 OR52E4Q8NGH9 312 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 CNOT9Q92600 299 aaKnown RBP9.97□□□□□ -0.81
VPS28-214ENST00000531032 DNAJA3Q96EY1 480 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 CCDC115Q96NT0 180 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 TRNT1Q96Q11 434 aaKnown RBP9.97□□□□□ -0.81
VPS28-214ENST00000531032 SORT1Q99523 831 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 YAE1D1Q9NRH1 226 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 NKIRAS1Q9NYS0 192 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 MARCOQ9UEW3 520 aaPredicted RBP9.97□□□□□ -0.81
VPS28-214ENST00000531032 BTNL2Q9UIR0 455 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 DCTN4Q9UJW0 460 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 POU2F3Q9UKI9 436 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 FLVCR1Q9Y5Y0 555 aa9.97□□□□□ -0.81
VPS28-214ENST00000531032 TMED7-TICAM2A0A0A6YYA0 188 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 TMEM120BA0PK00 339 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 TMEM72A0PK05 275 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 FAM234BA2RU67 622 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 ELOA3DA6NLF2 546 aaPredicted RBP9.96□□□□□ -0.82
VPS28-214ENST00000531032 A8MV72 311 aaPredicted RBP9.96□□□□□ -0.82
VPS28-214ENST00000531032 H7C417 338 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 AP3D1O14617 1153 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 GPRIN2O60269 458 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 EIF1BO60739 113 aaKnown RBP9.96□□□□□ -0.82
VPS28-214ENST00000531032 IFNA2P01563 188 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 C1QCP02747 245 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 CHRM4P08173 479 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 IMPDH2P12268 514 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 LBPP18428 481 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 RPS4Y1P22090 263 aaKnown RBP9.96□□□□□ -0.82
VPS28-214ENST00000531032 POLR2HP52434 150 aaKnown RBP9.96□□□□□ -0.82
VPS28-214ENST00000531032 MAP2K6P52564 334 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 OR2B6P58173 313 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 SLC35A1P78382 337 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 TXNL4AP83876 142 aaKnown RBP9.96□□□□□ -0.82
VPS28-214ENST00000531032 LOXL1Q08397 574 aaPredicted RBP9.96□□□□□ -0.82
VPS28-214ENST00000531032 SLC17A1Q14916 467 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 SYPL1Q16563 259 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 ELOA3BQ3SY89 546 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 C6orf52Q5T4I8 152 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 C1QTNF12Q5T7M4 302 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 OGFOD2Q6N063 350 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 PODNL1Q6PEZ8 512 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 CLEC2AQ6UVW9 174 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 CASP12Q6UXS9 341 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 RNF130Q86XS8 419 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms