RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 CRISP3P54108 245 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 HPCAP84074 193 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 FADDQ13158 208 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 PDSS1Q5T2R2 415 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 SFRP5Q5T4F7 317 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 PRAMEF8Q5VWM4 474 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 PRAMEF7Q5VXH5 474 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 TSPYL5Q86VY4 417 aaPredicted RBP9.43□□□□□ -0.9
CD44-227ENST00000528086 PEX5LQ8IYB4 626 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 SLC43A2Q8N370 569 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 LILRB1Q8NHL6 650 aaPredicted RBP9.43□□□□□ -0.9
CD44-227ENST00000528086 NFKBIDQ8NI38 313 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 ZNF563Q8TA94 476 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 SLC25A43Q8WUT9 341 aaPredicted RBP9.43□□□□□ -0.9
CD44-227ENST00000528086 NINJ1Q92982 152 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 C3orf49Q96BT1 292 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 S100PBPQ96BU1 408 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 TMEM204Q9BSN7 226 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 MED18Q9BUE0 208 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 PTDSS2Q9BVG9 487 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 SPATA9Q9BWV2 254 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 ACTR6Q9GZN1 396 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 TMEM45AQ9NWC5 275 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 NDRG3Q9UGV2 375 aa9.43□□□□□ -0.9
CD44-227ENST00000528086 SETD2Q9BYW2 2564 aaPredicted RBP9.43□□□□□ -0.9
CD44-227ENST00000528086 ANK3Q12955 4377 aaKnown RBP9.42□□□□□ -0.9
CD44-227ENST00000528086 IGKV1D-42A0A075B6H8 117 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 LIPT2A6NK58 231 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 PDLIM1O00151 329 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 FZD7O75084 574 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 GOSR1O95249 250 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 ADAP00813 363 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 TFPIP10646 304 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 COX5AP20674 150 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 FPR1P21462 350 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 ADSLP30566 484 aaPredicted RBP9.42□□□□□ -0.9
CD44-227ENST00000528086 KCNJ5P48544 419 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 PCBP3P57721 371 aaKnown RBP9.42□□□□□ -0.9
CD44-227ENST00000528086 STX1BP61266 288 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 GUCY1A3Q02108 690 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 DMTNQ08495 405 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 PDK3Q15120 406 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 TAB1Q15750 504 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 LIN52Q52LA3 116 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 TMEM201Q5SNT2 666 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 BEND4Q6ZU67 534 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 GOLGA6L1Q8N7Z2 621 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 TMEM99Q8N816 258 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 GPR32P1Q8NGA4 272 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 PIK3IP1Q96FE7 263 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 TMUB1Q9BVT8 246 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 TMEM120AQ9BXJ8 343 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 TMEM38AQ9H6F2 299 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 TIGARQ9NQ88 270 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 DLL4Q9NR61 685 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 FGFR1OP2Q9NVK5 253 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 ARGLU1Q9NWB6 273 aaPredicted RBP9.42□□□□□ -0.9
CD44-227ENST00000528086 TMEM181Q9P2C4 612 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 KLHL9Q9P2J3 617 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 USP22Q9UPT9 525 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 TRAPPC4Q9Y296 219 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 GPR52Q9Y2T5 361 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 HDGFL3Q9Y3E1 203 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 NF1P21359 2839 aa9.42□□□□□ -0.9
CD44-227ENST00000528086 A0A0G2JND7 137 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 FTCDNL1E5RQL4 147 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 MFN2O95140 757 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 LYPD3O95274 346 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 IGHV3-9P01782 118 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 RAF1P04049 648 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 ETS2P15036 469 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 NCF2P19878 526 aaPredicted RBP9.41□□□□□ -0.9
CD44-227ENST00000528086 CLK1P49759 484 aaKnown RBP9.41□□□□□ -0.9
CD44-227ENST00000528086 ANXA11P50995 505 aaKnown RBP9.41□□□□□ -0.9
CD44-227ENST00000528086 OR2B6P58173 313 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 MTPNP58546 118 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 ADAM8P78325 824 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 CDK6Q00534 326 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 SLC17A1Q14916 467 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 ZNF311Q5JNZ3 666 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 GCNT6Q5T4J0 391 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 GTF2IRD2BQ6EKJ0 949 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 DHRS4L2Q6PKH6 230 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 NHLRC1Q6VVB1 395 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 Q6ZT83 130 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 NET1Q7Z628 596 aaPredicted RBP9.41□□□□□ -0.9
CD44-227ENST00000528086 GTF2IRD2Q86UP8 949 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 WDFY1Q8IWB7 410 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 OR4D11Q8NGI4 311 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 BBS10Q8TAM1 723 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 NEUROG1Q92886 237 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 ANKRD27Q96NW4 1050 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 ZNF385AQ96PM9 386 aaKnown RBP9.41□□□□□ -0.9
CD44-227ENST00000528086 ZNF317Q96PQ6 595 aaPredicted RBP9.41□□□□□ -0.9
CD44-227ENST00000528086 CGREF1Q99674 301 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 POTEKPQ9BYX7 375 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 OR10A4Q9H209 315 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 SERINC1Q9NRX5 453 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 NPAP1Q9NZP6 1156 aa9.41□□□□□ -0.9
CD44-227ENST00000528086 CALML5Q9NZT1 146 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms