RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 GSTA4O15217 222 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 MFN2O95140 757 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 IFNA14P01570 189 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 OPN1SWP03999 348 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 GKN3PP0CG01 181 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 FOSL1P15407 271 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 CALB2P22676 271 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 PSMA4P25789 261 aaKnown RBP9.09□□□□□ -0.95
VPS28-204ENST00000526054 CPOXP36551 454 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 HTR3AP46098 478 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 IDH2P48735 452 aaKnown RBP9.09□□□□□ -0.95
VPS28-204ENST00000526054 RGS8P57771 180 aaPredicted RBP9.09□□□□□ -0.95
VPS28-204ENST00000526054 SESN3P58005 492 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 NCALDP61601 193 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 MERTKQ12866 999 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 PDSS1Q5T2R2 415 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 C3orf33Q6P1S2 294 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 PLEKHM3Q6ZWE6 761 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 CCDC80Q76M96 950 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 YTHDF3Q7Z739 585 aaKnown RBP9.09□□□□□ -0.95
VPS28-204ENST00000526054 MED12LQ86YW9 2145 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 WFDC11Q8NEX6 87 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 INTS12Q96CB8 462 aaKnown RBP9.09□□□□□ -0.95
VPS28-204ENST00000526054 KCTD14Q9BQ13 255 aaPredicted RBP9.09□□□□□ -0.95
VPS28-204ENST00000526054 GSX1Q9H4S2 264 aaPredicted RBP9.09□□□□□ -0.95
VPS28-204ENST00000526054 TMEM185BQ9H7F4 350 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 SERINC1Q9NRX5 453 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 ADA2Q9NZK5 511 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 CLCF1Q9UBD9 225 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 TESQ9UGI8 421 aaKnown RBP9.09□□□□□ -0.95
VPS28-204ENST00000526054 PACSIN3Q9UKS6 424 aa9.09□□□□□ -0.95
VPS28-204ENST00000526054 EIF1AYO14602 144 aaKnown RBP9.08□□□□□ -0.96
VPS28-204ENST00000526054 ATP5HO75947 161 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 RCBTB2O95199 551 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 NTN1O95631 604 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 HRGP04196 525 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 C8BP07358 591 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 APOBEC1P41238 236 aaKnown RBP9.08□□□□□ -0.96
VPS28-204ENST00000526054 SLC1A3P43003 542 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 GSK3BP49841 420 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 POLR2HP52434 150 aaKnown RBP9.08□□□□□ -0.96
VPS28-204ENST00000526054 CLDN20P56880 219 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 DMTNQ08495 405 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 BNIP1Q12981 228 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 LRRC23Q53EV4 343 aaPredicted RBP9.08□□□□□ -0.96
VPS28-204ENST00000526054 WBP2NLQ6ICG8 309 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 PLXDC2Q6UX71 529 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 ESPNLQ6ZVH7 1005 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 ADGRE4PQ86SQ3 457 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 RANBP3LQ86VV4 465 aaPredicted RBP9.08□□□□□ -0.96
VPS28-204ENST00000526054 LILRA2Q8N149 483 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 CADM2Q8N3J6 435 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 SMYD1Q8NB12 490 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 SLC25A43Q8WUT9 341 aaPredicted RBP9.08□□□□□ -0.96
VPS28-204ENST00000526054 WNT2BQ93097 391 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 TAMM41Q96BW9 452 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 KLHL15Q96M94 604 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 DACH2Q96NX9 599 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 NPAS1Q99742 590 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 PIGMQ9H3S5 423 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 PLEKHF2Q9H8W4 249 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 PAQR5Q9NXK6 330 aaPredicted RBP9.08□□□□□ -0.96
VPS28-204ENST00000526054 TMEM181Q9P2C4 612 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 RPS6KB2Q9UBS0 482 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 BAG5Q9UL15 447 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 USP22Q9UPT9 525 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 CHST2Q9Y4C5 530 aa9.08□□□□□ -0.96
VPS28-204ENST00000526054 B2RBV5 119 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 CXCR6O00574 342 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 FRS3O43559 492 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 TPST1O60507 370 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 ADAM11O75078 769 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 GMNNO75496 209 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 GCM2O75603 506 aaPredicted RBP9.07□□□□□ -0.96
VPS28-204ENST00000526054 FCGR2AP12318 317 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 IL11P20809 199 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 FKBP2P26885 142 aaKnown RBP9.07□□□□□ -0.96
VPS28-204ENST00000526054 TACR3P29371 465 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 SLC7A1P30825 629 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 KDELR2P33947 212 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 SFTPDP35247 375 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 ACAA2P42765 397 aaKnown RBP9.07□□□□□ -0.96
VPS28-204ENST00000526054 EIF1AXP47813 144 aaKnown RBP9.07□□□□□ -0.96
VPS28-204ENST00000526054 KCNJ5P48544 419 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 RASSF2P50749 326 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 MAP2K6P52564 334 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 SUCLG1P53597 346 aaKnown RBP9.07□□□□□ -0.96
VPS28-204ENST00000526054 SLC25A3Q00325 362 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 SGCBQ16585 318 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 SAMD4BQ5PRF9 694 aaKnown RBP9.07□□□□□ -0.96
VPS28-204ENST00000526054 P4HA3Q7Z4N8 544 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 BIVMQ86UB2 503 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 GGNQ86UU5 652 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 DEFB107AQ8IZN7 70 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 ATP6V1C2Q8NEY4 427 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 OR2V1Q8NHB1 315 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 FIG4Q92562 907 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 PROX1Q92786 737 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 UCN2Q96RP3 112 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 TRIM2Q9C040 744 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms