RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 TSACCQ96A04 125 aaPredicted RBP4.14□□□□□ -1.75
CD44-220ENST00000525688 CCDC124Q96CT7 223 aaKnown RBP4.14□□□□□ -1.75
CD44-220ENST00000525688 SH3YL1Q96HL8 342 aaPredicted RBP4.14□□□□□ -1.75
CD44-220ENST00000525688 NDNQ99608 321 aa4.14□□□□□ -1.75
CD44-220ENST00000525688 CHID1Q9BWS9 393 aa4.14□□□□□ -1.75
CD44-220ENST00000525688 KRTAP4-5Q9BYR2 181 aa4.14□□□□□ -1.75
CD44-220ENST00000525688 LRRC2Q9BYS8 371 aa4.14□□□□□ -1.75
CD44-220ENST00000525688 DERL2Q9GZP9 239 aa4.14□□□□□ -1.75
CD44-220ENST00000525688 SAV1Q9H4B6 383 aaPredicted RBP4.14□□□□□ -1.75
CD44-220ENST00000525688 MARCH7Q9H992 704 aa4.14□□□□□ -1.75
CD44-220ENST00000525688 RNF186Q9NXI6 227 aa4.14□□□□□ -1.75
CD44-220ENST00000525688 PAQR5Q9NXK6 330 aaPredicted RBP4.14□□□□□ -1.75
CD44-220ENST00000525688 LHX3Q9UBR4 397 aa4.14□□□□□ -1.75
CD44-220ENST00000525688 EPHA6Q9UF33 1036 aa4.14□□□□□ -1.75
CD44-220ENST00000525688 NAGKQ9UJ70 344 aa4.14□□□□□ -1.75
CD44-220ENST00000525688 ABCG2Q9UNQ0 655 aa4.14□□□□□ -1.75
CD44-220ENST00000525688 TMED7Q9Y3B3 224 aa4.14□□□□□ -1.75
CD44-220ENST00000525688 WDR45Q9Y484 360 aa4.14□□□□□ -1.75
CD44-220ENST00000525688 RIPK3Q9Y572 518 aa4.14□□□□□ -1.75
CD44-220ENST00000525688 TIMM22Q9Y584 194 aa4.14□□□□□ -1.75
CD44-220ENST00000525688 BRCA2P51587 3418 aa4.14□□□□□ -1.75
CD44-220ENST00000525688 FOCADQ5VW36 1801 aa4.14□□□□□ -1.75
CD44-220ENST00000525688 MKI67P46013 3256 aaKnown RBP4.13□□□□□ -1.75
CD44-220ENST00000525688 CDK5RAP2Q96SN8 1893 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 PPIAL4CA0A0B4J2A2 164 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 IGHV4-61A0A0C4DH41 118 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 ZNF840PA6NDX5 716 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 MGAT4DA6NG13 374 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 OR6C70A6NIJ9 312 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 A8MUA0 341 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 FBP2O00757 339 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 DLGAP1O14490 977 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 TOR1AO14656 332 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 CHUKO15111 745 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 RAD51BO15315 384 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 BUB3O43684 328 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 PRKAB2O43741 272 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 KRT33AO76009 404 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 EPOP01588 193 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 IGHV4-59P01825 116 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 CRYAAP02489 173 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 SERPINE2P07093 398 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 STSP08842 583 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 PPIAL4GP0DN37 164 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 MLNP12872 115 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 ETS2P15036 469 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 ACADSP16219 412 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 MSNP26038 577 aaKnown RBP4.13□□□□□ -1.75
CD44-220ENST00000525688 GNA11P29992 359 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 HNRNPH3P31942 346 aaKnown RBP4.13□□□□□ -1.75
CD44-220ENST00000525688 P2RY2P41231 377 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 CASP4P49662 377 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 LBX1P52954 281 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 GEMP55040 296 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 PHEXP78562 749 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 SLAMF1Q13291 335 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 CDH18Q13634 790 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 CRMP1Q14194 572 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 GANABQ14697 944 aaKnown RBP4.13□□□□□ -1.75
CD44-220ENST00000525688 CCDC6Q16204 474 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 SLC5A12Q1EHB4 618 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 ZNF672Q499Z4 452 aaPredicted RBP4.13□□□□□ -1.75
CD44-220ENST00000525688 DNAL1Q4LDG9 190 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 RNLSQ5VYX0 342 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 LIPJQ5W064 366 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 TWF2Q6IBS0 349 aaKnown RBP4.13□□□□□ -1.75
CD44-220ENST00000525688 FUT10Q6P4F1 479 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 GDPD4Q6W3E5 623 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 HSDL2Q6YN16 418 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 SLC35D2Q76EJ3 337 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 ARCQ7LC44 396 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 SMIM29Q86T20 159 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 AKAP14Q86UN6 197 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 SERPINA9Q86WD7 417 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 TBC1D10CQ8IV04 446 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 CROCCP3Q8IVE0 287 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 MLKLQ8NB16 471 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 OR5AU1Q8NGC0 362 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 OR51G2Q8NGK0 314 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 OR9G4Q8NGQ1 327 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 FCAMRQ8WWV6 532 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 HTR3CQ8WXA8 447 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 P3H4Q92791 437 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 AKR1E2Q96JD6 320 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 SERAC1Q96JX3 654 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 GLT1D1Q96MS3 346 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 CCDC3Q9BQI4 270 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 NDUFAF3Q9BU61 184 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 PARD6GQ9BYG4 376 aaPredicted RBP4.13□□□□□ -1.75
CD44-220ENST00000525688 PARD6BQ9BYG5 372 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 SHARPINQ9H0F6 387 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 CENPHQ9H3R5 247 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 DHX33Q9H6R0 707 aaKnown RBP4.13□□□□□ -1.75
CD44-220ENST00000525688 IL1RL2Q9HB29 575 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 DYRK4Q9NR20 520 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 TREX1Q9NSU2 369 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 PHF11Q9UIL8 331 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 KCNG2Q9UJ96 466 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 MAN1B1Q9UKM7 699 aa4.13□□□□□ -1.75
CD44-220ENST00000525688 EMCNQ9ULC0 261 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms