RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 GSG1LQ6UXU4 331 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 BMFQ96LC9 184 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 FN3KQ9H479 309 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 CEP250Q9BV73 2442 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 ICE1Q9Y2F5 2266 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 A0A1W2PR48 441 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 ASPDHA6ND91 283 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 POM121CA8CG34 1229 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 SYT5O00445 386 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 DOK2O60496 412 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 FCMRO60667 390 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 CRTAPO75718 401 aaPredicted RBP11.78□□□□□ -0.52
USP53-209ENST00000514665 PET100P0DJ07 73 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 CSNK2A1P68400 391 aaPredicted RBP11.78□□□□□ -0.52
USP53-209ENST00000514665 GPR50Q13585 617 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 CCINQ13939 588 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 TRMT12Q53H54 448 aaKnown RBP11.78□□□□□ -0.52
USP53-209ENST00000514665 BEND4Q6ZU67 534 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 CSNK2A3Q8NEV1 391 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 ALG12Q9BV10 488 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 PCDHB16Q9NRJ7 776 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 SPHK1Q9NYA1 384 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 VSX1Q9NZR4 365 aaPredicted RBP11.78□□□□□ -0.52
USP53-209ENST00000514665 ABRACLQ9P1F3 81 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 HHLA2Q9UM44 414 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 F5H5P2 479 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 ARSBP15848 533 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 SLC6A8P48029 635 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 SLC26A5P58743 744 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 OXA1LQ15070 435 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 LCN10Q6JVE6 187 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 SFXN4Q6P4A7 337 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 GTPBP8Q8N3Z3 284 aaPredicted RBP11.78□□□□□ -0.52
USP53-209ENST00000514665 OR5H2Q8NGV7 314 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 MFSD8Q8NHS3 518 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 LGALS14Q8TCE9 139 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 TMEM106AQ96A25 262 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 OR14A2Q96R54 314 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 ZNF587Q96SQ5 575 aaPredicted RBP11.78□□□□□ -0.52
USP53-209ENST00000514665 SIAEQ9HAT2 523 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 IL21Q9HBE4 155 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 INPP5EQ9NRR6 644 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 C1GALT1Q9NS00 363 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 SEMA4GQ9NTN9 838 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 SLC23A2Q9UGH3 650 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 ASXL3Q9C0F0 2248 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 ARAP2Q8WZ64 1704 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 SVILO95425 2214 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 ANKRD33BA6NCL7 494 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 NAP1L6A6NFF2 107 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 PPM1DO15297 605 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 CHRNB1P11230 501 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 ETV5P41161 510 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 ETV1P50549 477 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 DLX5P56178 289 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 FGL1Q08830 312 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 MFSD13AQ14CX5 517 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 DUSP5Q16690 384 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 PLEKHN1Q494U1 663 aaPredicted RBP11.78□□□□□ -0.52
USP53-209ENST00000514665 SLC22A6Q4U2R8 563 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 HBMQ6B0K9 141 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 WBP2NLQ6ICG8 309 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 TPRA1Q86W33 373 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 NUDT22Q9BRQ3 303 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 CHST8Q9H2A9 424 aa11.78□□□□□ -0.52
USP53-209ENST00000514665 PCM1Q15154 2024 aa11.77□□□□□ -0.52
USP53-209ENST00000514665 BORCS7-ASMTA0A0B4J1R7 106 aa11.77□□□□□ -0.52
USP53-209ENST00000514665 TRBV5-4A0A0C4DH59 114 aa11.77□□□□□ -0.52
USP53-209ENST00000514665 TMEM269A0A1B0GVZ9 245 aa11.77□□□□□ -0.52
USP53-209ENST00000514665 H0Y8X5 98 aa11.77□□□□□ -0.52
USP53-209ENST00000514665 HMGN4O00479 90 aa11.77□□□□□ -0.52
USP53-209ENST00000514665 ZNF217O75362 1048 aa11.77□□□□□ -0.52
USP53-209ENST00000514665 POU3F1Q03052 451 aaPredicted RBP11.77□□□□□ -0.52
USP53-209ENST00000514665 LAS2Q8IYD9 372 aa11.77□□□□□ -0.52
USP53-209ENST00000514665 RNF113BQ8IZP6 322 aaKnown RBP11.77□□□□□ -0.52
USP53-209ENST00000514665 VN1R2Q8NFZ6 395 aa11.77□□□□□ -0.52
USP53-209ENST00000514665 LILRB4Q8NHJ6 448 aa11.77□□□□□ -0.52
USP53-209ENST00000514665 DYNC2LI1Q8TCX1 351 aa11.77□□□□□ -0.52
USP53-209ENST00000514665 MED17Q9NVC6 651 aa11.77□□□□□ -0.52
USP53-209ENST00000514665 ZNF226Q9NYT6 803 aa11.77□□□□□ -0.52
USP53-209ENST00000514665 RHBDD3Q9Y3P4 386 aa11.77□□□□□ -0.52
USP53-209ENST00000514665 A0A0A6YYH2 397 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 A6NJ64 397 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 SMLR1H3BR10 107 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 LCMT2O60294 686 aaKnown RBP11.77□□□□□ -0.53
USP53-209ENST00000514665 PRAF2O60831 178 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 GDNFP39905 211 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 B4GALNT1Q00973 533 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 ZP2Q05996 745 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 LTBQ06643 244 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 DLX2Q07687 328 aaPredicted RBP11.77□□□□□ -0.53
USP53-209ENST00000514665 RPL22L1Q6P5R6 122 aaKnown RBP11.77□□□□□ -0.53
USP53-209ENST00000514665 ZNF704Q6ZNC4 412 aaPredicted RBP11.77□□□□□ -0.53
USP53-209ENST00000514665 ABHD12BQ7Z5M8 362 aaPredicted RBP11.77□□□□□ -0.53
USP53-209ENST00000514665 HMGCLL1Q8TB92 370 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 OR1E3Q8WZA6 343 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 DHCR7Q9UBM7 475 aaKnown RBP11.77□□□□□ -0.53
USP53-209ENST00000514665 ZNF281Q9Y2X9 895 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 POM121BA6NF01 834 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 ZNF264O43296 627 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms