RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 NPR2P20594 1047 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 HOXA1P49639 335 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 DIO3P55073 304 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 FBXW4P57775 412 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 ZNF766Q5HY98 468 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 MTX3Q5HYI7 312 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 LCN1P1Q5VSP4 162 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 ZNF585AQ6P3V2 769 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 TGIF2LXQ8IUE1 241 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 RHEBL1Q8TAI7 183 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 HMGCLL1Q8TB92 370 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 SLC2A12Q8TD20 617 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 TM9SF4Q92544 642 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 YIPF5Q969M3 257 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 C3orf30Q96M34 536 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 SLC6A16Q9GZN6 736 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 TREM1Q9NP99 234 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 TAS2R9Q9NYW1 312 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 DKK4Q9UBT3 224 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 NXT1Q9UKK6 140 aaKnown RBP7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 LOC102724200A0A096LPH7 203 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 IGHV1-45A0A0A0MS14 117 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 MEX3AA1L020 520 aaKnown RBP7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 SEC14L5O43304 696 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 ERGP11308 486 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 HRH2P25021 359 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 PRDX6P30041 224 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 MC3RP41968 323 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 TGM4P49221 684 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 AQP5P55064 265 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 DUSP2Q05923 314 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 CCNIQ14094 377 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 PCOLCEQ15113 449 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 TMEM44Q2T9K0 475 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 DEGS2Q6QHC5 323 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 CYP2R1Q6VVX0 501 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 RNF111Q6ZNA4 994 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 NUP54Q7Z3B4 507 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 LIX1Q8N485 282 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 RBMXL3Q8N7X1 1067 aaKnown RBP7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 OR4N2Q8NGD1 307 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 ZNF775Q96BV0 537 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 GNRHR2Q96P88 292 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 DHRS4Q9BTZ2 278 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 C20orf27Q9GZN8 174 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 GSTO2Q9H4Y5 243 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 LRTM1Q9HBL6 345 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 DNAJB11Q9UBS4 358 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 ZNF69Q9UC07 566 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 DTX4Q9Y2E6 619 aa7.25□□□□□ -1.25
LIMCH1-219ENST00000514096 A0A0G2JMM0 328 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 A0A1W2PPB8 328 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 A0A1W2PRS3 328 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 ANKUB1A6NFN9 424 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 DBX1A6NMT0 343 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 KIR3DP1A8MWS1 328 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 SHISA8B8ZZ34 492 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 ZNF354AO60765 605 aaPredicted RBP7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 SEMA7AO75326 666 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 ABHD2P08910 425 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 SLC2A1P11166 492 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 SLC1A6P48664 564 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 ILF2Q12905 390 aaKnown RBP7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 GANABQ14697 944 aaKnown RBP7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 TMEM88Q6PEY1 159 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 SLC29A4Q7RTT9 530 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 GPR151Q8TDV0 419 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 DAZLQ92904 295 aaKnown RBP7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 ATG101Q9BSB4 218 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 OR51B6Q9H340 312 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 METTL7AQ9H8H3 244 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 PLEKHA6Q9Y2H5 1048 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 V9GYQ6 96 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 COL5A1P20908 1838 aaPredicted RBP7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 SETD2Q9BYW2 2564 aaPredicted RBP7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 H0YIG0 161 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 H3BMH7 237 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 SIGLEC5O15389 551 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 PROM1O43490 865 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 NDUFA2O43678 99 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 DIRAS3O95661 229 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 MLYCDO95822 493 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 CBX7O95931 251 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 ZNF25P17030 456 aaPredicted RBP7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 PSMB9P28065 219 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 FMO3P31513 532 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 ARRB2P32121 409 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 KCNJ3P48549 501 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 INPP1P49441 399 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 RAB38P57729 211 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 RPS7P62081 194 aaKnown RBP7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 ATP6AP1LQ52LC2 224 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 LIPJQ5W064 366 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 ZFP1Q6P2D0 407 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 HAGHLQ6PII5 290 aaPredicted RBP7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 CYS1Q717R9 158 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 OR52R1Q8NGF1 315 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 OR6M1Q8NGM8 313 aa7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 DPH2Q9BQC3 489 aaPredicted RBP7.24□□□□□ -1.25
LIMCH1-219ENST00000514096 ZNF385DQ9H6B1 395 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms