RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 GID4Q8IVV7 300 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 CMTM4Q8IZR5 234 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 AMER3Q8N944 861 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 SMPDL3BQ92485 455 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 FGF13Q92913 245 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 KCTD12Q96CX2 325 aaKnown RBP8.92□□□□□ -0.98
VCAN-210ENST00000513960 UBQLN3Q9H347 655 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 GLIPR2Q9H4G4 154 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 EXO5Q9H790 373 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 MAN2C1Q9NTJ4 1040 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 ASF1BQ9NVP2 202 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 USP36Q9P275 1121 aaKnown RBP8.92□□□□□ -0.98
VCAN-210ENST00000513960 CBLCQ9ULV8 474 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 MFSD2BA6NFX1 497 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 D6RAR5 112 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 F5H5P2 479 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 B4GALT2O60909 372 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 RASGRP1O95267 797 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 PPP1R3DO95685 299 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 TBX6O95947 436 aaPredicted RBP8.92□□□□□ -0.98
VCAN-210ENST00000513960 ADRB1P08588 477 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 ERGP11308 486 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 MAT2AP31153 395 aaKnown RBP8.92□□□□□ -0.98
VCAN-210ENST00000513960 MC3RP41968 323 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 SGCGQ13326 291 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 SLC9A5Q14940 896 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 TAF13Q15543 124 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 CCNJQ5T5M9 372 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 MEPCEQ7L2J0 689 aaKnown RBP8.92□□□□□ -0.98
VCAN-210ENST00000513960 MORN4Q8NDC4 146 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 OR10Z1Q8NGY1 313 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 LILRB1Q8NHL6 650 aaPredicted RBP8.92□□□□□ -0.98
VCAN-210ENST00000513960 ADAT1Q9BUB4 502 aaKnown RBP8.92□□□□□ -0.98
VCAN-210ENST00000513960 HCAR1Q9BXC0 346 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 CCDC86Q9H6F5 360 aaKnown RBP8.92□□□□□ -0.98
VCAN-210ENST00000513960 COMMD9Q9P000 198 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 FBXL4Q9UKA2 621 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 ADAM29Q9UKF5 820 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 KCNK6Q9Y257 313 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 SPTBP11277 2137 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 UNC119BA6NIH7 251 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 LATO43561 262 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 SUSD5O60279 629 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 LCMT2O60294 686 aaKnown RBP8.92□□□□□ -0.98
VCAN-210ENST00000513960 CLEC3AO75596 197 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 B3GALNT1O75752 331 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 KAT7O95251 611 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 TRHRP34981 398 aaPredicted RBP8.92□□□□□ -0.98
VCAN-210ENST00000513960 OMPP47874 163 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 PCBP4P57723 403 aaKnown RBP8.92□□□□□ -0.98
VCAN-210ENST00000513960 GPR85P60893 370 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 CSNK1G2P78368 415 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 PRDX1Q06830 199 aaKnown RBP8.92□□□□□ -0.98
VCAN-210ENST00000513960 CCDC157Q569K6 752 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 YOD1Q5VVQ6 348 aaPredicted RBP8.92□□□□□ -0.98
VCAN-210ENST00000513960 SHEQ5VZ18 495 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 CD200R1LQ6Q8B3 271 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 POGLUT1Q8NBL1 392 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 BVESQ8NE79 360 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 OR51Q1Q8NH59 317 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 PTP4A1Q93096 173 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 HGDQ93099 445 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 ELP4Q96EB1 424 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 S100A16Q96FQ6 103 aaKnown RBP8.92□□□□□ -0.98
VCAN-210ENST00000513960 MNTQ99583 582 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 ZNF559Q9BR84 538 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 NKX6-2Q9C056 277 aaPredicted RBP8.92□□□□□ -0.98
VCAN-210ENST00000513960 IFT22Q9H7X7 185 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 TREM1Q9NP99 234 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 KCMF1Q9P0J7 381 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 ERVK-19Q9WJR5 959 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 TRPM6Q9BX84 2022 aa8.92□□□□□ -0.98
VCAN-210ENST00000513960 KANTRA0A1W2PQU2 76 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 PRAMEF27A3QJZ7 478 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 MCRIP1C9JLW8 97 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 LAMP2P13473 410 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 CBX5P45973 191 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 RAB28P51157 221 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 ID2Q02363 134 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 PCGF3Q3KNV8 242 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 AADACL4Q5VUY2 407 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 RNLSQ5VYX0 342 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 OR13C2Q8NGS9 318 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 OR4K13Q8NH42 304 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 SYNPRQ8TBG9 265 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 DUSP19Q8WTR2 217 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 ACOT11Q8WXI4 607 aaPredicted RBP8.91□□□□□ -0.98
VCAN-210ENST00000513960 INSM2Q96T92 566 aaPredicted RBP8.91□□□□□ -0.98
VCAN-210ENST00000513960 PELOQ9BRX2 385 aaKnown RBP8.91□□□□□ -0.98
VCAN-210ENST00000513960 RSPO3Q9BXY4 272 aaPredicted RBP8.91□□□□□ -0.98
VCAN-210ENST00000513960 SLC6A17Q9H1V8 727 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 LDAHQ9H6V9 325 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 ZNF304Q9HCX3 659 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 SIRT3Q9NTG7 399 aaPredicted RBP8.91□□□□□ -0.98
VCAN-210ENST00000513960 THAP10Q9P2Z0 257 aaPredicted RBP8.91□□□□□ -0.98
VCAN-210ENST00000513960 LIPT1Q9Y234 373 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 PRAMEF2O60811 474 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 SERPINA3P01011 423 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 FBXO45P0C2W1 286 aa8.91□□□□□ -0.98
VCAN-210ENST00000513960 TRA2BP62995 288 aaKnown RBP8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms