RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 SAGP10523 405 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 AQP2P41181 271 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 ASMTP46597 345 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 HMGCS2P54868 508 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 AIMP2Q13155 320 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 NDUFA9Q16795 377 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 NSUN5P2Q63ZY6 315 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 OR2A2Q6IF42 318 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 PRSS55Q6UWB4 352 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 ZNF813Q6ZN06 617 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 ZNF433Q8N7K0 673 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 OR6X1Q8NH79 312 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 SLC25A36Q96CQ1 311 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 SULT4A1Q9BR01 284 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 GPR61Q9BZJ8 451 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 P2RY12Q9H244 342 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 PTGES2Q9H7Z7 377 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 MYBPHLA2RUH7 354 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 CPED1A4D0V7 1026 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 SOCS6O14544 535 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 SLC25A14O95258 325 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 F10P00742 488 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 ELNP15502 786 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 RGS19P49795 217 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 TNFAIP8L2Q6P589 184 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 CDK20Q8IZL9 346 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 OR56A3Q8NH54 315 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 SLC39A7Q92504 469 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 PHYHIPLQ96FC7 376 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 OARD1Q9Y530 152 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 C7orf77A4D0Y5 90 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 GABARAPH6UMI1 98 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 GAAP10253 952 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 PRKAR2AP13861 404 aaKnown RBP11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 IGFBP6P24592 240 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 MAP3K8P41279 467 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 GSK3AP49840 483 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 THEM4Q5T1C6 240 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 GFI1BQ5VTD9 330 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 FRG2Q64ET8 278 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 PRSS35Q8N3Z0 413 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 OR10H4Q8NGA5 316 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 RNF141Q8WVD5 230 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 SMPDL3BQ92485 455 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 SLC25A38Q96DW6 304 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 TCTN2Q96GX1 697 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 FRG2BQ96QU4 278 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 GPR20Q99678 358 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 ZDHHC5Q9C0B5 715 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 ZNF350Q9GZX5 532 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 EXO5Q9H790 373 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 TMEM27Q9HBJ8 222 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 MMP26Q9NRE1 261 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 MRPS18AQ9NVS2 196 aaKnown RBP11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 OSER1Q9NX31 292 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 ZNF337Q9Y3M9 751 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 TTC3P53804 2025 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 FLRT2O43155 660 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 OR2F2O95006 317 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 SLC2A10O95528 541 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 BCHEP06276 602 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 NPSP0C0P6 89 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 PTNP21246 168 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 C5AR1P21730 350 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 HMGB2P26583 209 aaKnown RBP11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 CDK5Q00535 292 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 HGFACQ04756 655 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 OR2F1Q13607 317 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 AWAT1Q58HT5 328 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 ADGRF1Q5T601 910 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 FCRLAQ7L513 359 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 SLC36A1Q7Z2H8 476 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 NRROSQ86YC3 692 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 C17orf47Q8NEP4 570 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 LKAAEAR1Q8TD35 194 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 WRAP53Q9BUR4 548 aaKnown RBP11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 FNDC11Q9BVV2 318 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 DOK5Q9P104 306 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 KCND3Q9UK17 655 aa11.15□□□□□ -0.62
LIMCH1-213ENST00000511496 A0A0B4J2A0 478 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 MEIS3P1A6NDR6 274 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 J3QLW9 94 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 ZNF19P17023 458 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 TMEM11P17152 192 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 EPORP19235 508 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 ADPRHP54922 357 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 CBFBQ13951 182 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 MEF2DQ14814 521 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 ANXA8L1Q5VT79 327 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 TMEM244Q5VVB8 128 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 SP8Q8IXZ3 490 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 SIRT6Q8N6T7 355 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 INO80EQ8NBZ0 244 aaPredicted RBP11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 OR52N2Q8NGI0 321 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 OR4D11Q8NGI4 311 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 RAB8BQ92930 207 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 RFKQ969G6 155 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 BOCQ9BWV1 1114 aa11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 DUSP15Q9H1R2 295 aaPredicted RBP11.15□□□□□ -0.63
LIMCH1-213ENST00000511496 NMRK2Q9NPI5 230 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms