RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 SQSTM1Q13501 440 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 LRRC32Q14392 662 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 ATXN7L3Q14CW9 347 aaPredicted RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 ETFDHQ16134 617 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 BCL7AQ4VC05 210 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 TMEM244Q5VVB8 128 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 PRAMEF18Q5VWM3 479 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 VRK2Q86Y07 508 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 SULF2Q8IWU5 870 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 AQP11Q8NBQ7 271 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 SLC26A10Q8NG04 563 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 OR4S1Q8NGB4 309 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 OR5A1Q8NGJ0 315 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 OR5B3Q8NH48 314 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 HCAR2Q8TDS4 363 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 APOBEC4Q8WW27 367 aaKnown RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 FOXJ1Q92949 421 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 ANKRD9Q96BM1 317 aaPredicted RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 TRMT2BQ96GJ1 504 aaKnown RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 ZNF48Q96MX3 618 aaPredicted RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 GAL3ST4Q96RP7 486 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 TMEM175Q9BSA9 504 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 GORASP2Q9H8Y8 452 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 CSNK1G1Q9HCP0 422 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 TCFL5Q9UL49 500 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 NENFQ9UMX5 172 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 CCDC187A0A096LP49 1063 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 MYOCOSA0A1B0GUC4 107 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 HYKKA2RU49 373 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 OR52A4PA6NMU1 304 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 ZNF729A6NN14 1252 aaPredicted RBP3.35□□□□□ -1.87
USP53-205ENST00000509769 MPTX1A8MV57 137 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 H3BMH7 237 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 ACKR2O00590 384 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 RRP8O43159 456 aaKnown RBP3.35□□□□□ -1.87
USP53-205ENST00000509769 PI15O43692 258 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 SUSD5O60279 629 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 DUSP11O75319 330 aaKnown RBP3.35□□□□□ -1.87
USP53-205ENST00000509769 PIAS1O75925 651 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 CPNE6O95741 557 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 TBX18O95935 607 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 DLDP09622 509 aaKnown RBP3.35□□□□□ -1.87
USP53-205ENST00000509769 H2AFB1P0C5Y9 115 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 ACP2P11117 423 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 ADRB3P13945 408 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 GABRR2P28476 465 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 HOXC12P31275 282 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 THBS4P35443 961 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 CD96P40200 585 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 ACTR1BP42025 376 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 RARRES1P49788 294 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 RIDAP52758 137 aaKnown RBP3.35□□□□□ -1.87
USP53-205ENST00000509769 BACE1P56817 501 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 SNRPD1P62314 119 aaKnown RBP3.35□□□□□ -1.87
USP53-205ENST00000509769 IRF5Q13568 498 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 MLC1Q15049 377 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 PLK5Q496M5 336 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 GPR33Q49SQ1 333 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 ACSM3Q53FZ2 586 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 PLA1AQ53H76 456 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 KHDC3LQ587J8 217 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 ZNF691Q5VV52 312 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 GRASPQ7Z6J2 395 aaPredicted RBP3.35□□□□□ -1.87
USP53-205ENST00000509769 BAP18Q8IXM2 172 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 FAM24BQ8N5W8 94 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 NKAIN3Q8N8D7 197 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 GPR148Q8TDV2 347 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 DNASE1L2Q92874 299 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 SFXN2Q96NB2 322 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 ZNF599Q96NL3 588 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 RBP7Q96R05 134 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 PARK7Q99497 189 aaKnown RBP3.35□□□□□ -1.87
USP53-205ENST00000509769 POP1Q99575 1024 aaKnown RBP3.35□□□□□ -1.87
USP53-205ENST00000509769 DUSP9Q99956 384 aaKnown RBP3.35□□□□□ -1.87
USP53-205ENST00000509769 TMEM47Q9BQJ4 181 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 TXNDC17Q9BRA2 123 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 MRIQ9BWK5 157 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 STRA6Q9BX79 667 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 GPR87Q9BY21 358 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 BCAS3Q9H6U6 928 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 WDR55Q9H6Y2 383 aaPredicted RBP3.35□□□□□ -1.87
USP53-205ENST00000509769 PIDD1Q9HB75 910 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 SGK2Q9HBY8 427 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 OSGEPQ9NPF4 335 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 SPANXB1Q9NS25 103 aaPredicted RBP3.35□□□□□ -1.87
USP53-205ENST00000509769 ZDHHC18Q9NUE0 388 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 ERVK13-1Q9NX77 482 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 TMEM59LQ9UK28 342 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 B3GALT5Q9Y2C3 310 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 FER1L6Q2WGJ9 1857 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 A0A1B0GV50 99 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 PRSS51A0A1B0GVH4 220 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 TRDV1A0A1B0GX56 115 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 NEMP2A6NFY4 417 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 ANKRD28O15084 1053 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 ENSAO43768 121 aaKnown RBP3.35□□□□□ -1.87
USP53-205ENST00000509769 FMO6PO60774 539 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 CH25HO95992 272 aa3.35□□□□□ -1.87
USP53-205ENST00000509769 MBPP02686 304 aaPredicted RBP3.35□□□□□ -1.87
USP53-205ENST00000509769 SCG5P05408 212 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms