RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ATAD3BQ5T9A4 648 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 RIPPLY2Q5TAB7 128 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 C1orf146Q5VVC0 180 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CLEC6AQ6EIG7 209 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 SULT1C3Q6IMI6 304 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 SLC25A24Q6NUK1 477 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 RWDD4Q6NW29 188 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 LRRC8BQ6P9F7 803 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 DHRS4L2Q6PKH6 230 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 RTL4Q6ZR62 310 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 LINC00696Q6ZRV3 163 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 MSANTD1Q6ZTZ1 278 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 NIPA1Q7RTP0 329 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 FAM122BQ7Z309 247 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 MIER3Q7Z3K6 550 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 PEX26Q7Z412 305 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 TAF8Q7Z7C8 310 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 TMEM179BQ7Z7N9 219 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 LHFPL3Q86UP9 236 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 TPRA1Q86W33 373 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 NUDCD3Q8IVD9 361 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 LRRC8AQ8IWT6 810 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 BBS7Q8IWZ6 715 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CLYBLQ8N0X4 340 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 UBE2J2Q8N2K1 259 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 HDDC3Q8N4P3 179 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 ALLCQ8N6M5 410 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 BBS1Q8NFJ9 593 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 OR5T1Q8NG75 326 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 OR52N1Q8NH53 320 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 GRPEL2Q8TAA5 225 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CCDC12Q8WUD4 166 aaPredicted RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 DNAJA4Q8WW22 397 aaPredicted RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 PYDC1Q8WXC3 89 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 KRT35Q92764 455 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 DGCR14Q96DF8 476 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 ZNF578Q96N58 590 aaPredicted RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 PLIN2Q99541 437 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 PRMT1Q99873 361 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 CACNG6Q9BXT2 260 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 ZNF350Q9GZX5 532 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 SLC22A4Q9H015 551 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 HDHD2Q9H0R4 259 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 METTL8Q9H825 291 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 CAB39LQ9H9S4 337 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 PLGRKTQ9HBL7 147 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 IL26Q9NPH9 171 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 MIEF1Q9NQG6 463 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 ZC4H2Q9NQZ6 224 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 C19orf12Q9NSK7 152 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 AGPAT5Q9NUQ2 364 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 NECAP2Q9NVZ3 263 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 RAB20Q9NX57 234 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CRCT1Q9UGL9 99 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CYB5R1Q9UHQ9 305 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 MAD2L2Q9UI95 211 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 NOCTQ9UK39 431 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 CDH7Q9ULB5 785 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 DIMT1Q9UNQ2 313 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 GPR132Q9UNW8 380 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 PSG11Q9UQ72 335 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 AURKCQ9UQB9 309 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 PDE10AQ9Y233 779 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 PPIL1Q9Y3C6 166 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 USP16Q9Y5T5 823 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 FANCD2Q9BXW9 1451 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 BCL9O00512 1426 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 ADCY9O60503 1353 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 LRPPRCP42704 1394 aaKnown RBP1.5□□□□□ -2.17
NUP54-208ENST00000508604 FAM135AQ9P2D6 1515 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 NRCAMQ92823 1304 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 CCDC88BA6NC98 1476 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 ERCC6Q03468 1493 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 RNF103-CHMP3A0A140T963 221 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 A0A1B0GVL5 298 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 ANKDD1BA6NHY2 528 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 OR6C70A6NIJ9 312 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 PCP4L1A6NKN8 68 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 YDJCA8MPS7 323 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 EVPLLA8MZ36 301 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 F8W036 122 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 CXCL11O14625 94 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 TOR1AO14656 332 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 CLOCKO15516 846 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 TOXO94900 526 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 RPP14O95059 124 aaKnown RBP1.5□□□□□ -2.17
NUP54-208ENST00000508604 PGLSO95336 258 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 LYPLA2O95372 231 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 AHSA1O95433 338 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 PNPP00491 289 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 IFNB1P01574 187 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 RLN1P04808 185 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 SERPINA5P05154 406 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 TFPTP0C1Z6 253 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 STAG3L3P0CL85 134 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 ICAM2P13598 275 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 MX1P20591 662 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 SERPINB1P30740 379 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 SRD5A2P31213 254 aa1.5□□□□□ -2.17
NUP54-208ENST00000508604 CASP14P31944 242 aa1.5□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms